Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02355 ATGGCAGATGGCAAAGTAAACACTGGCAGTAGCTCGGGGCCCGAAGAGGTGAAGCCATCACCTGGCATTTCCTTGGCGCTATCTGACAGCACTTTTACATACGATGAATTAGCTATGGCAACGGATGGATTCTCCAAATCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTTCACAAAGGAGTTCTCCCAAATGGGACAATTGTTGCAGTCAAGCAGTTGAAATCTGAGAGTAGACAAGGGGAGCGCGAGTTCCATGCAGAAGTGGAGGTCATTAGCCGTGTGCATCACAGACATCTTGTTTCCCTAGTTGGTTACAGCATATCAGACAACCAGAAGATGCTTGTCTACGAGTATGTGCCAAATAATACACTAGAATTTCATTTGCATGGAACGGACAGACCATCTATGGACTGGTCGACTAGGATGAAGATTGCTATAGGATCTGCAAAAGGATTGGCATATCTGCATGAGGACTGTGAGTTTACTAATAATGTTTCAGAATCTTCTGTTCAGGTTGCAGATTTTGGACTTGCAAAATTTTCATCAGAGACAGAAACCCATGTTTCAACTCGGGTGATGGGAACTTTTGGATACATGGCTCCAGAATATGCTGCTAGTGGGAAACTCACTGAAAAGTCAGACGTTTTCTCCTTTGGTGTTGTGCTTTTGGAGTTGATCACTGGACGAAAACCTGTTGATAAAACTCAACCCTTCTTAGATGACAGCATGGTTGAATGGTCTAGGCCTTTACTGTCTCAAGGTTTTGAGAATGGCAACTTCGATGGACTTGTTGATCCAAAGTTGCAGTCAAATTACAATCATGAAGAGATGATCCGAATGACTGCTTGTGCTGCAACATGTGTGCGCCATTCAGCCAGGCTTCGGCCTCGAATGAGCCAGGTTGTTCGAGCCCTGGAAGGAAATATTTCTCTAGAAGTTCTAAATGGGGGGAGCGCACCTGGACACAGCGGAGTTTTTGGCGTCCAATACAGTGAAGACATGAAGAACTTCAGGAAGCTGGCACTGGAAAGCCAAGAGCAAGGCATTAGTGAGTACAGTGGTCCCAGCAGTGATTATGGTCGACATCCATCTGTCTCTAGCAGTTCGGGACAGCAAAATACGCAAGAAATGGAAATGGGGAAGGTGAAGGGTAGCAACCAAGATTCTGCGTCAGGCTCTTGA 1185 0.4549 MADGKVNTGSSSGPEEVKPSPGISLALSDSTFTYDELAMATDGFSKSNLLGQGGFGYVHKGVLPNGTIVAVKQLKSESRQGEREFHAEVEVISRVHHRHLVSLVGYSISDNQKMLVYEYVPNNTLEFHLHGTDRPSMDWSTRMKIAIGSAKGLAYLHEDCEFTNNVSESSVQVADFGLAKFSSETETHVSTRVMGTFGYMAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTQPFLDDSMVEWSRPLLSQGFENGNFDGLVDPKLQSNYNHEEMIRMTACAATCVRHSARLRPRMSQVVRALEGNISLEVLNGGSAPGHSGVFGVQYSEDMKNFRKLALESQEQGISEYSGPSSDYGRHPSVSSSSGQQNTQEMEMGKVKGSNQDSASGS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02355 394 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 20 348 IPR047117 -
Spst4g02355 394 Gene3D Transferase(Phosphotransferase) domain 1 120 314 - -
Spst4g02355 394 ProSiteProfiles Protein kinase domain profile. 44 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02355 394 MobiDBLite consensus disorder prediction 1 23 - -
Spst4g02355 394 Gene3D Phosphorylase Kinase; domain 1 15 119 - -
Spst4g02355 394 MobiDBLite consensus disorder prediction 347 394 - -
Spst4g02355 394 Pfam Protein tyrosine and serine/threonine kinase 47 306 IPR001245 GO:0004672|GO:0006468
Spst4g02355 394 MobiDBLite consensus disorder prediction 346 394 - -
Spst4g02355 394 SUPERFAMILY Protein kinase-like (PK-like) 21 306 IPR011009 -
Spst4g02355 394 FunFam proline-rich receptor-like protein kinase PERK8 120 320 - -
Spst4g02355 394 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Spst4g02355 394 MobiDBLite consensus disorder prediction 1 17 - -
Spst4g02355 394 FunFam Proline-rich receptor-like protein kinase PERK8 16 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02355 Spst-Chr4 64187445 64190432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02355 32 371 Trihelix Transcription Factor Family AT1G70460 57.465 1.55e-133 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Spst4g02355 PK_Tyr_Ser-Thr 1.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02355 - - ccaj:109808169 637.876