Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02349 ATGGGAGTTAACATGTCCAACACACCACCTCACACCAAAGACTTGTTTTCCTCTCCAGCTCTCTCTCTTAGCCTAGCTGGGATTTTCCGGCATGCGGAGGAGGCGGCGGCGACGTCCCGCATGGTGGTGGCCGGGCATGAGGTCCGGCGAGAGGATACTGTTGAGATTAGCAGTGACAACTCAGGACCTGTGAGATCCAGGTCAGAAGAGGATTTTGATGGAGAAGGTGTTCATGAGGATGACGATGATGAGAACAACGATGATGGTGATAAGAATAAGAAGAAGAAGAGGAAGTATCACAGACACACCGTTGAACAGATCAGAGAAATGGAAGCGCTTTTCAAGGAATCACCGCATCCTGATGAAAAGCAGAGGCAACAACTCAGCAAGCAACTTGGCCTTGCTCCAAGGCAAGTCAAATTTTGGTTCCAAAATCGTCGAACCCAAATCAAGACAATACAAGAGCGCCATGAAAACTCACTGTTGAAGACAGAATTAGACAAACTGAGGGAGGAAAATAAGGTCATGCGGGAGACCATCAACAAATCTTGTTGCCCCAATTGTGGCATGGTAACGGCTACCATAGATGCTTCCATGTCCACTGAAGAAAAACAACTTCTTATTGAAAATACCAAACTCAAAGCTGAGGTAGAGAAACTCCGAGCAGCTTTGGGAAAATGTTCACCAACATCTCCTACATCTTGTGCTGGTCATGGTCATGATGAGGAAGAGAATAGAAGCTCTTTCGACTTTTACAATGGAATTTTCGGGCTCGAGAAATCAAGGTTAGTGGAAATAGTGAACCGGGCAACGGAGGAACTCATAAAGATGGCAAACATGGGGGAACCATTATGGGTTCGTAGCGTTGAAGCAGGTCGTGAAATACTTAACTATGATGAATATGTGAAGGAGTTCGCAGTTGAAAATTTGTGCGGTGATAGGCCAAAGGCATTCATCGAAGCCTCAAGAGACACCGAGGTTGTTTTTATGGATCTCCCTCAGCTGCTCCAAACCTTTCTAGATGTGAATCATTGGAAGGAAATGTTTCCGTGCTTGATATCAAAGGCTGCAACTGTTGATGTTATATGCAATGGAGAAGGTTCCAACAGGAATGGTGCAGTGCAATTGATGTTTGCTGAGCTGCAAATGCTTACTCCAATGGTGCCCACCAGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGTTGAGTGATGAACAGTGGGCAATAATTGATGTATCTATAGACAAAGTAGAAGACAACATTGACGCATCCCTCGTGAAATGTAGAAAACGACCATCTGGTTGTATTATTGAGGATAAATCAAATGGCCATTGCAAGGTGATATGGGTGGAGCACTTGGAGTGCAAGAGGAGCACAATCCATACATTGTATCGAAACATTGTCAACAGCGGCCTAGCTTTTGGGGCAAGGCATTGGATAACCACATTACAAATTCAATGTGAACGACTAGTTTTTAACATGGCAACAAATGTTCCTACGAAGGATTCAAGTGGTGTTGCAACATTGGCTGGGAGGAAAAGCATTTTGAAGTTGGCACAAAGAATGACATCGACTTTTTGCCATGCAGCTGGCGCGTCAAGTTTCCATACATGGACCAAGTTCACGAGTAAAACAGGAGAAGACATAAGGATAAGCTCTAGGAAGAACATGAATGACCCCGGTGAACCTCTTGGGGTTATCTTGTGTGCGGTTTCTTCTGTATGGCTTCCTGTCTCTCGTAATGTGCTGTTTGATTTCTTGAGGGATGAAGCTCGTCGAAGTGAGTGGGATATGATGTCCAGTGGTGGGTCGGTGCAGTCCATTGCAAATTTAGCTAGAGGAAAAGACCGAGGCAATGTTGTAAACGTCCAAAAAATACAATCAAAAGAAAACAGTGTGTGGGTACTGCAAGATAGCTGCACAAGTGCTTTTGAGTCAATGGTGGCATATGCTCCAGTGGACTTTGCTAGTCTCCAGTCTGTGCTGACAGGATGTGATTCAAGTAATCTTCCCATTTTGCCGTCAGGATTCTCAATTCTTCCTGATGGGATTGAGGGAAGGCCATTGGTGATTAGGTCAAGGCAAGAAGAAAAAGGAACAGAAGAGGGGTCTTTATTTACAATGGTATTCCAGATGCTTGTCAATGCTTCTCCTACAGCCAAGTTAACCATGGAATCTGTGGAATCGGCTAATAATCTTGTGTCTTGTACATTAAGAAATATTAGAACATGTTTACAGTGTGAAGATGGTTAG 2253 0.4425 MGVNMSNTPPHTKDLFSSPALSLSLAGIFRHAEEAAATSRMVVAGHEVRREDTVEISSDNSGPVRSRSEEDFDGEGVHEDDDDENNDDGDKNKKKKRKYHRHTVEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKTIQERHENSLLKTELDKLREENKVMRETINKSCCPNCGMVTATIDASMSTEEKQLLIENTKLKAEVEKLRAALGKCSPTSPTSCAGHGHDEEENRSSFDFYNGIFGLEKSRLVEIVNRATEELIKMANMGEPLWVRSVEAGREILNYDEYVKEFAVENLCGDRPKAFIEASRDTEVVFMDLPQLLQTFLDVNHWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEQWAIIDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECKRSTIHTLYRNIVNSGLAFGARHWITTLQIQCERLVFNMATNVPTKDSSGVATLAGRKSILKLAQRMTSTFCHAAGASSFHTWTKFTSKTGEDIRISSRKNMNDPGEPLGVILCAVSSVWLPVSRNVLFDFLRDEARRSEWDMMSSGGSVQSIANLARGKDRGNVVNVQKIQSKENSVWVLQDSCTSAFESMVAYAPVDFASLQSVLTGCDSSNLPILPSGFSILPDGIEGRPLVIRSRQEEKGTEEGSLFTMVFQMLVNASPTAKLTMESVESANNLVSCTLRNIRTCLQCEDG 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02349 750 FunFam Homeobox-leucine zipper protein GLABRA 2 265 488 - -
Spst4g02349 750 CDD homeodomain 100 151 IPR001356 GO:0003677
Spst4g02349 750 SMART START_1 265 489 IPR002913 GO:0008289
Spst4g02349 750 FunFam Homeobox-leucine zipper protein HDG1 81 169 - -
Spst4g02349 750 Gene3D - 81 165 - -
Spst4g02349 750 Coils Coil 159 179 - -
Spst4g02349 750 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Spst4g02349 750 Coils Coil 203 223 - -
Spst4g02349 750 SUPERFAMILY Bet v1-like 258 489 - -
Spst4g02349 750 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Spst4g02349 750 ProSiteProfiles START domain profile. 256 492 IPR002913 GO:0008289
Spst4g02349 750 MobiDBLite consensus disorder prediction 51 104 - -
Spst4g02349 750 Gene3D - 324 488 IPR023393 -
Spst4g02349 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 92 745 IPR042160 -
Spst4g02349 750 SMART HOX_1 95 157 IPR001356 GO:0003677
Spst4g02349 750 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Spst4g02349 750 Pfam START domain 266 489 IPR002913 GO:0008289
Spst4g02349 750 CDD START_ArGLABRA2_like 260 488 - -
Spst4g02349 750 SUPERFAMILY Bet v1-like 518 739 - -
Spst4g02349 750 SUPERFAMILY Homeodomain-like 83 154 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02349 Spst-Chr4 64159284 64164372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02349 56 749 Homeobox Transcription Factor Family AT1G79840 63.675 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst4g02349 START 6.9e-55 CL0209