Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02329 ATGACACAAACAGCAACAACAACAACCTCGTCTGAAACAACCTCGGCCGAAACAACCTCTTCTACATCTTCACCGTCCTCACATTCGGGCCCAAAGGCTCAGGCTCAGGCCCGGACCAAGAGGCCCAGAGACTGCAGCAAGCACCCGGTGTACCACGGTGTGCGGAAGCGGAATTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCGCGCAAGAAGTCCCGCATCTGGCTCGGAACCTTCGCCACCCCGGAAATGGCGGCGCGGGCTCATGACGTGGCGGCGCTCAGCATCAAGGGCCAATCCGCAATCCTCAACTTCCCCGAAATCGCAGACCTGCTCCCCCGTCCCCTCACGTGCTCCCCACGCGACATTCAAGCCGCCGCCAGCGCCGCCGCCTCGATGTCTAAATTCGACCGCGCGACACAATCGTCGGACTCGGAAACGGAAACTTCGCATGAATCCGAACTGAGCGAGATAGTGGAGCTGCCGAACATCGAAGACAGCTTCGAGTCCTGCGTGGACTCGTTCGTGATGGTCGACGTTGTTGACAGTTGGGTGTTTCCGCCATTGGAGTCGTTCTGTGCGGAGGAGTTATTTCTGCAACAGAGTTTCAACGAGTCTTGTTCTGAAACACTATTACCCATTTGGGATTGA 654 0.5749 MTQTATTTTSSETTSAETTSSTSSPSSHSGPKAQAQARTKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGQSAILNFPEIADLLPRPLTCSPRDIQAAASAAASMSKFDRATQSSDSETETSHESELSEIVELPNIEDSFESCVDSFVMVDVVDSWVFPPLESFCAEELFLQQSFNESCSETLLPIWD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02329 217 MobiDBLite consensus disorder prediction 142 156 - -
Spst4g02329 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 168 - -
Spst4g02329 217 MobiDBLite consensus disorder prediction 135 157 - -
Spst4g02329 217 MobiDBLite consensus disorder prediction 1 52 - -
Spst4g02329 217 MobiDBLite consensus disorder prediction 37 51 - -
Spst4g02329 217 MobiDBLite consensus disorder prediction 1 34 - -
Spst4g02329 217 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Spst4g02329 217 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Spst4g02329 217 Gene3D AP2/ERF domain 50 109 IPR036955 GO:0003700|GO:0006355
Spst4g02329 217 CDD AP2 51 108 IPR001471 GO:0003700|GO:0006355
Spst4g02329 217 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Spst4g02329 217 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Spst4g02329 217 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Spst4g02329 217 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Spst4g02329 217 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02329 Spst-Chr4 64003577 64004230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02329 1 189 AP2-EREBP Transcription Factor Family AT5G11590 49.048 2.14e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g02329 AP2 4.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02329 - K09286 gmx:100804056 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02329 4 64003577 64004230 Spst4g02329 4 64003577 64004230 ECH