Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02325 ATGTGGTTTGAGCAGGAATCAAGTGTTAAGCAGCAGCACAATGGTGGGCTGTCACTGGGAAAGAAAACAGCTATGGCCACAGACACACACTGCTCACTTTCCTCAACTATCCGCAAACACTACGGGTTCAACCCGTTCAACCCGTTCAACCGGGTAAAAGAGAATCGGGTTCATGTTTTTAAACAGCTTGTCACTGGTCAGATTGACCCGAGAGCCCGAAACCGGTTTACTGCTTTATTTGAATTAGCTGCTGTGGAAATAATGTCCTGCAAGGATGGTAGCAAAAACGGAATGGATAACGGGAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCTTAGAGAGGCTCTATCACGATTGTCCTAAACCAAGTTCCATTCGCCGCCAGCAACTCATACGCGAGTGCCCCATTCTCTCTAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGAAAGGAGTCGTCGCGGTTGCAAGCTGTAAATAGGAAGTTGACTGCGATGAACAAGCTGCTGATGGAGGAGAATGATAGGTTGCAGAAACAGGTGTCTCATCTAGTGTATGAAAATGGTTATTTTCGTCAACATACCCAGAATACTACGCAGGCAACCAAAGACACAAGCTGTGAATCAGCTGTGACGAGTGGTCAACACAGTTTGACAACTCAACATCCCCCACGGGATGCGAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCTCTGGTGTGGCAGCAAGAGCCTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCAGAAATTCTCAAAGATCGGCCTTTGTGGTTTCGCGATTGTCGAGCTGTTGATGTTCTCAATGTGCTGCCCACTGCAAATGGTGGAACCATTGAGCTGCTTTACATGCAGCTATATGCACCAACCACATTGGCACCTGCTCGAGATTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGAAGTCTAGTGATATGTGAGAGGTCTCTTAAAAACACTCAAAATGGTCCAAGCATGCCTCCTGTGCAACATTTTGTTAGGGCAGAGATGCTGCCCAGTGGGTACCTAATCAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGACTTAGAGCCATGGAGTGTGCCAGAGGTGCTACGTCCGCTTTATGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCGGCCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCAAATGTCACTGGGTGGGGTAGACGACCAGCAGCCCTTAGAGCTCTGAGCCAAAGACTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACCGATGAGGGATGGACAACTATCGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCCTCCCCTGACAAATTAATGGGTTTGAATCTTCCCTTTACCAATGGATTTCCGTCTGTCAGTAATGCAGTGCTGTGTGCCAAAGCATCAATGCTATTACAGAATGTTCCCCCTGCCATTCTCCTAAGGTTCCTACGGGAGCACAGATCAGAATGGGCAGACAACAATATGGATGCATACACAGCTGCTGCCATCAAAGTTGGCCCTTGCAGTTTATCAGGATCACGTGTTGGAAATTATGGAGGTCAAGTTATACTCCCTCTAGCACACACTATTGAGCATGAAGAGTTTTTGGAAGTCATCAAATTGGAAGGAGTTGCTCATTCTCCTGAAGACACAATGATGCCCAGAGAAATGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCTTTTGCTGATGATGCCCCCCTTCTACCTTCTGGGTTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGCACCCTTGACCTTGCATCTGCCCTTGACATTGGCCCCAGTGGAAACCGAGCTACGAATGAAAGTGCTGGAAACTCCAGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTCGAAAGCCATATGCAAGAGCATGTAGCATCTATGGCACGCCAATATGTCCGGAGCATTATATCGTCCGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCACAAACTCTTGCTCATTGGATTTGCAACAGTTACAGGTGCTACTTGGGTGTGGAACTACTTAAGTCTAACAACGAGGGGAATGAATCTTTGCTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGGCATTGCCAGTGTTTACTTTCTCAAACCAGGCTGGGCTTGACATGCTGGAGACCACCCTAGTTGCATTACAAGATATATCTTTAGAGAAAATATTTGATGATCATGGACGAAAAATTCTCTTTTCAGAGTTTCCTCAGATTATTCAACAGGGTTTTGCATGTCTCCAAGGTGGTATTTGTCTTTCAAGCATGGGCCGACCCGTCTCATACGAGAGAGTTGTTGCTTGGAAGGGTTCACTCCTCGTGAAATGA 2727 0.4631 MWFEQESSVKQQHNGGLSLGKKTAMATDTHCSLSSTIRKHYGFNPFNPFNRVKENRVHVFKQLVTGQIDPRARNRFTALFELAAVEIMSCKDGSKNGMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTTQATKDTSCESAVTSGQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCSGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTTIGNDGVDDVTILVNSSPDKLMGLNLPFTNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPEDTMMPREMFLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDIGPSGNRATNESAGNSSCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDISLEKIFDDHGRKILFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKGSLLVK 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02325 908 ProSiteProfiles START domain profile. 236 450 IPR002913 GO:0008289
Spst4g02325 908 CDD START_ArGLABRA2_like 240 455 - -
Spst4g02325 908 Pfam MEKHLA domain 780 902 IPR013978 -
Spst4g02325 908 Pfam START domain 246 454 IPR002913 GO:0008289
Spst4g02325 908 SUPERFAMILY Homeodomain-like 101 163 IPR009057 -
Spst4g02325 908 SUPERFAMILY Bet v1-like 245 455 - -
Spst4g02325 908 FunFam homeobox-leucine zipper protein ATHB-15 281 462 - -
Spst4g02325 908 Pfam Homeodomain 102 160 IPR001356 GO:0003677
Spst4g02325 908 CDD bZIP 154 193 - -
Spst4g02325 908 Gene3D - 280 461 IPR023393 -
Spst4g02325 908 CDD homeodomain 102 162 IPR001356 GO:0003677
Spst4g02325 908 ProSiteProfiles 'Homeobox' domain profile. 97 161 IPR001356 GO:0003677
Spst4g02325 908 MobiDBLite consensus disorder prediction 207 240 - -
Spst4g02325 908 MobiDBLite consensus disorder prediction 207 235 - -
Spst4g02325 908 Coils Coil 167 191 - -
Spst4g02325 908 FunFam Homeobox-leucine zipper protein REVOLUTA 102 157 - -
Spst4g02325 908 Gene3D - 93 168 - -
Spst4g02325 908 SMART START_1 245 455 IPR002913 GO:0008289
Spst4g02325 908 SMART HOX_1 99 165 IPR001356 GO:0003677
Spst4g02325 908 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 98 902 IPR044830 GO:0003700
Spst4g02325 908 SUPERFAMILY Bet v1-like 482 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02325 Spst-Chr4 63968790 63982022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02325 88 875 Homeobox Transcription Factor Family AT1G52150 85.063 0.0 1407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst4g02325 START 2e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02325 K09338 - gmx:100800165 1592.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02325 4 63968790 63982022 Spst4g02325 4 63968790 63982022 ECH
Spst5g00209 5 1803621 1810010 Spst4g02325 4 63968790 63982022 PCT