Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02318 ATGCAGTCCAACTTTGATTGGCCTGTTGCTGAAGTTCTAGTTGGCTTCAGTCTTCTCTGCTTTGATTTTGCTCACTGCTTGCAAAATCTGAACTTCAAGAAAGGACAACGAAAGTTATGCAAGTCGGGCATTGGTGGGTGGTCTTCGTGCAGTAACTTCTCTGCTTCACAGAGGAGGCGTTCTGCTTCATCGAGAGTGACGTGTTGTGCTCCATCTTCAAGCAGCGGCAAACCTCACGGCGGCTTTGTGATGGAGAAAGAGATAAATGGGGGTTCCACGGTGGTCGACGTCGACGTCAACCCACACCCACACCCCGAGGATCAGGGTGTGACTCCGTGGTGTATCTCTGTTTCTAGTGGGTATACTTTGTTGAGAGATCCACACTTCAACAAAGGACTCGCCTTCACTGAAAAAGAGAGGGACGCCCACTACTTGCGTGGCCTTCTTCCCCCAACAGTTATTTCTCAAGAAACTCAGGTGAAGAAAATGATCCAACACGTACGTCAGTATCAAGTTCCATTGCACAAGTACATGGCAATGATGGATCTTCAGCACAATGCACATGGTATGCCAATCCTCATCTCTCAGGAGAGAAATGAAAGGTTGTTTTACAAGCTTCTAGTTGATTATGTGGAGGAGTTACTACCAGTTGTCTATACTCCAACAGTTGGTGAAGCTTGCCAGAAATATGGAAGTATCTTCATGCAGCCTCAGGGACTTTATATAAGTTTGAAGGAGAAAGGGAGGATTCTTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGATGGAGAGAGAATTCTGGGTCTTGGGGATCTTGGCTGTCAACAGGGAATGGGAATACCGGTAGGAAAACTTTCTTTATATTCAGCACTTGGCGGAGTTCATCCTCGTGCTTGCTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGTTGTTGAATGACGAATTATATATAGGGCTCAAGCAAAAACGAGCAACTGGGCAGGAATATGCTGAACTTTTGCATGAATTTATGACAGCAGTCAAGCAGAATTATGGGGAAAAAATCCTTGTTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGGTCAACACATCTTGTCTTTAATGATGATATTCAAGGTACAGCATCCGTGGTTCTTGCAGGACTGGTTGCAGCTCTGAAATTGGTTGGGGGAAACTTGATTGATCACAGGTTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAAATCATAGCACTTGAAACTTCAAAACGGTCAAATGTTCCACTGGAAGAAGTGCGCAAGCACATTTGGTTGGTGGACTCAAAGGGTTTGATTGAGAGTTCCCGTAAAGAATCGCTTCAACAATTTAAGAGGCCCTGGGCTCATGAACATGAACCTGTTAAGGAACTTGTAGATGCTGTTAATAAAATTAAGCCAACGGTGTTAATTGGAACATCAGGACAAGGGAGAACTTTTACTAAGGAAGTCATTGAAGCTATGGCTTCCCATAATGAGAAACCTATTATTCTTTCCCTTTCTAACCCGACATCACAATCAGAATGCACTGCTGAAGAAGCTTACACTTGGAGCAAGGGACGTGCCATTTATGCTAGTGGGAGCCCTTTTAGCCCAGTTGAATATGATGGAAAAGTGTTTGTGCCTGGCCAGTCCAATAATGCATACGTTTTTCCTGGATTTGGTCTTGGTTTAATAATGTCTGGAACCATTCGCGTGCATGATGACCTGCTTCTGGCAGCTTCTGAAGCTTTGGCTTCACAGGTGACTCAGGAGGACTATGACAAGGGGCTCATATACCCTCCATTCCGCAACATCAGAAAGATTTCAGCACACATAGCAGCCAACGTGGCTGCAAAGGCCTATGAGCTTGGCTTGGCCACTCACCTTCCACAACCAAAAGATTTGGTGAAGTTTGCTGAGAGCTCTATGTATACACCAGACTATAGAATCTACCGATCAAAAGTTGTCTTTAGTGGGCATGCTAGCTGCTTTCAACGATGTGTCTTTCTAGCAATGGATTCTGTTGTGAAGAAGATGAGCAGAATTTATGCTGCCAGAGGAGAATACAATACACTCACTTAG 2142 0.4412 MQSNFDWPVAEVLVGFSLLCFDFAHCLQNLNFKKGQRKLCKSGIGGWSSCSNFSASQRRRSASSRVTCCAPSSSSGKPHGGFVMEKEINGGSTVVDVDVNPHPHPEDQGVTPWCISVSSGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPTVISQETQVKKMIQHVRQYQVPLHKYMAMMDLQHNAHGMPILISQERNERLFYKLLVDYVEELLPVVYTPTVGEACQKYGSIFMQPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQQGMGIPVGKLSLYSALGGVHPRACLPITIDVGTNNEKLLNDELYIGLKQKRATGQEYAELLHEFMTAVKQNYGEKILVQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLIDHRFLFLGAGEAGTGIAEIIALETSKRSNVPLEEVRKHIWLVDSKGLIESSRKESLQQFKRPWAHEHEPVKELVDAVNKIKPTVLIGTSGQGRTFTKEVIEAMASHNEKPIILSLSNPTSQSECTAEEAYTWSKGRAIYASGSPFSPVEYDGKVFVPGQSNNAYVFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTQEDYDKGLIYPPFRNIRKISAHIAANVAAKAYELGLATHLPQPKDLVKFAESSMYTPDYRIYRSKVVFSGHASCFQRCVFLAMDSVVKKMSRIYAARGEYNTLT 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02318 713 Gene3D - 118 385 IPR037062 GO:0004471
Spst4g02318 713 FunFam Malic enzyme 118 385 - -
Spst4g02318 713 PANTHER MALIC ENZYME-RELATED 95 672 - -
Spst4g02318 713 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 110 387 IPR046346 -
Spst4g02318 713 SMART malic_2 196 378 IPR012301 GO:0004471
Spst4g02318 713 Gene3D - 386 684 - -
Spst4g02318 713 FunFam Malic enzyme 386 672 - -
Spst4g02318 713 SMART Malic_M_2 388 641 IPR012302 GO:0051287
Spst4g02318 713 ProSitePatterns Malic enzymes signature. 384 400 IPR015884 GO:0004471
Spst4g02318 713 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 388 673 IPR036291 -
Spst4g02318 713 PRINTS Malic enzyme signature 299 321 IPR001891 GO:0004470|GO:0004471
Spst4g02318 713 PRINTS Malic enzyme signature 415 431 IPR001891 GO:0004470|GO:0004471
Spst4g02318 713 PRINTS Malic enzyme signature 384 400 IPR001891 GO:0004470|GO:0004471
Spst4g02318 713 PRINTS Malic enzyme signature 202 226 IPR001891 GO:0004470|GO:0004471
Spst4g02318 713 PRINTS Malic enzyme signature 359 377 IPR001891 GO:0004470|GO:0004471
Spst4g02318 713 PRINTS Malic enzyme signature 518 534 IPR001891 GO:0004470|GO:0004471
Spst4g02318 713 CDD NAD_bind_1_malic_enz 388 666 - -
Spst4g02318 713 Pfam Malic enzyme, N-terminal domain 196 378 IPR012301 GO:0004471
Spst4g02318 713 Pfam Malic enzyme, NAD binding domain 388 640 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02318 Spst-Chr4 63906552 63915374 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02318 K00029 - gmx:100785718 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02318 4 63906552 63915374 Spst4g02318 4 63906552 63915374 ECH
Spst4g02318 4 63906552 63915374 Spst5g00214 5 1847116 1852583 ECH
Spst3g00882 3 12255756 12261269 Spst4g02318 4 63906552 63915374 ECH
Spst9g00988 9 8788240 8793202 Spst4g02318 4 63906552 63915374 ECH
Spst4g02318 4 63906552 63915374 Spst9g00988 9 8788240 8793202 ECH
Spst4g02318 4 63906552 63915374 Spst4g01880 4 59381163 59382644 ECH
Spst4g02318 4 63906552 63915374 Spst10g00920 10 9976422 9977669 ECH
Spst4g02318 4 63906552 63915374 Spst1g01120 1 13605337 13606934 ECH
Spst5g00214 5 1847116 1852583 Spst4g02318 4 63906552 63915374 PCT