Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02313 ATGATGTGGCAAAGAAGCCACAGGTCTTCGGAGGAGAGGAAACTGGAGCTTAGGCTTGGGCCACCTGGTGAAGAGTATCTCAATGAAAGCATCAAGAAATGCATCACAGAAAGAAACGAAACACCACTCACTCTTGGTTACTTCTCAACTCACAAAATTTCCACTTCTGACAAGCCAGGGCCAGGTGGGGCTATGCTGCCCACTGCATGGCCTTCCACATCCTACTACCAACACCAGGCTAAAGCCAAAGCTTCATCATTTCTTCAGCTCCAATCAAGGCCACAAAACATGTTCATGATGGGAAAGGAAGTGCCACAACTTTGTTGTGTAGAGAACAAGGCATTCTCACCCTCTTCTGCAAATACAACCGTGTCCAAAAGAACTGCTTCAGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTTCAAGTGGAAGCCCTTCTAAGTTGCCTACTGGGTCCCAGCAACATCATGTTGTTCCAGACCAGGTTGCTAGCCAGAAACCTACTTACAACCGTGGCAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGGACATCAATGCTTATGATAGCTATGAAAAACTTTCTTCAGCTGTTGATGAGCTCTTCAGAGGCCTCCTTGCAGAGATGAAGTTGTCTCATATTGCCTCGTCCCATTTCTGTTCTGGTCAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAATGAAGAGGAAGAGAAAGAGAAAGCCAATACGGGTTTATTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGAGATGTACCTTGGCACATGTTTGTGTCAACAGTGAAGAGGCTAAGGGTGTTGAAGAGTTCTGATCTTCCTGGTTTTGCCCTTAGTAGCAAGCAAGACTAG 942 0.4522 MMWQRSHRSSEERKLELRLGPPGEEYLNESIKKCITERNETPLTLGYFSTHKISTSDKPGPGGAMLPTAWPSTSYYQHQAKAKASSFLQLQSRPQNMFMMGKEVPQLCCVENKAFSPSSANTTVSKRTASGPVVGWPPIRSFRKNISSGSPSKLPTGSQQHHVVPDQVASQKPTYNRGKGLFVKINMDGVPIGRKLDINAYDSYEKLSSAVDELFRGLLAEMKLSHIASSHFCSGQRDSCAGGIQNNEEEEKEKANTGLLVGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSDLPGFALSSKQD 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02313 313 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 303 IPR003311 GO:0005634|GO:0006355
Spst4g02313 313 ProSiteProfiles PB1 domain profile. 180 300 IPR000270 GO:0005515
Spst4g02313 313 Pfam AUX/IAA family 15 307 IPR033389 -
Spst4g02313 313 Gene3D - 175 312 - -
Spst4g02313 313 FunFam Auxin-responsive protein 175 312 - -
Spst4g02313 313 SUPERFAMILY CAD & PB1 domains 173 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02313 Spst-Chr4 63873972 63876365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02313 183 303 B3 DNA Binding Superfamily AT2G46530 25.620 1.17e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst4g02313 AUX_IAA 2.7e-65 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02313 K14484 - gmx:100793822 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02313 4 63873972 63876365 Spst5g00223 5 1941520 1944201 ECH
Spst4g02313 4 63873972 63876365 Spst4g02313 4 63873972 63876365 ECH
Spst5g00223 5 1941520 1944201 Spst4g02313 4 63873972 63876365 PCT