Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02310 ATGGTCAAAGAAGCAGTTGAGGTTGTGAGAAGCAAACTGTTACCTAAGGCAAATACTATAAAGGAAATAAATGGTGGTCCAATAGTACCTACTCTCTCTGGTTGGATATGGAACTCTTTAGATCGCAAGATAGTGAAAGGGTGGGAGAGGGACTCAATGCCCCCTTTGAACCAAGCTCACGGGATAGTTGTCAGTGGGTATCTTTCGATTTCACCATTGTGCTTTGTCTGTAATTCTTGTCTCTCTACTCGAGGTTCTTCACGAGGTCCTGTCAGAGTTATTATGGGAAAAGCTAGCAGGTGGTTCAAGGGTTTGTTGGGGATGAAGAAGGAGAAGGACCACAGTGACAATTCAGGCTCACTGGCTCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCTAAGCCAGGGAAGGATGTGCCATCTTCAGTTCCTGCCACAGATAACACCTGGCTCAGATCCTACATTGCTGAAACAGAGAATGAGCAGAACAAACATGCAATTGCCGTTGCCGCTGCCACTGCCGCTGCTGCCGACGCCGCAGTGGCAGCCGCACAGGCTGCAGTGGCGGTTGTGAGGCTGACAAGTCAAGGTAGAGGTGCATTGTTCAGTGGAAGCAGGGAGAAGTGGGCTGCTGTGAAGATCCAAACTTTTTTTAGAGGCTACTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGGTACTTGGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGCATGCAAGCTCTGATAAGAGCTCAAACTGCTGTCAGAACACAGCGAGCTCGTAGATCCTTGAGCAAGGAAAGCAGATTTCTACCTGAATTTCTCGCAAGAAAATCTGTGGAACGATTTGATGAACCAAGGAGTGAATTCCACAGTAAAAGGTTACCTACATCCTATGAAACATCTTTGAATAGTTTTGATGAGAGTCCCAAGATTGTTGAAATTGACACATACAAGACTCGGTCAAGGTCTAGGCGCTTTACCTCTACAATGTCTGAGTGTGGAGAAGACATGCCCTGTCATGGAATGTCATCCCCTCTTCCTTGTCATGTCCCTGGCCGAATCTCCATTCCTGATTGCAGACACCTTCAAGATTTTGATTGGTATTTCAATGTTGATGAGTGTAGATTTTCCACTGCTCATAGCACCCCACGTTTTACAAACTATGCTCGCCCTAATGCTCCGGCTACACCAGCCAAGAGCGTTTGTGGAGACACCTTCTTCAGACCTTGCTCTAATTTTCCCAACTACATGGCCAATACTCAGTCATTCAAGGCAAAACTAAGGTCTCACAGTGCTCCAAAACAAAGACCCGAACCCAAGAAAAGGCTCTCACTCAATGAAGTGATGGCAGCAAGAAACAGCATAAGTAGTGTTAGAATGCAAAGGCCATCATCCAATTTCTTCCAGACTCAAGAATCCTGGAATTTTTGA 1470 0.4612 MVKEAVEVVRSKLLPKANTIKEINGGPIVPTLSGWIWNSLDRKIVKGWERDSMPPLNQAHGIVVSGYLSISPLCFVCNSCLSTRGSSRGPVRVIMGKASRWFKGLLGMKKEKDHSDNSGSLAPDKKEKKRWSFAKPGKDVPSSVPATDNTWLRSYIAETENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGALFSGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSLSKESRFLPEFLARKSVERFDEPRSEFHSKRLPTSYETSLNSFDESPKIVEIDTYKTRSRSRRFTSTMSECGEDMPCHGMSSPLPCHVPGRISIPDCRHLQDFDWYFNVDECRFSTAHSTPRFTNYARPNAPATPAKSVCGDTFFRPCSNFPNYMANTQSFKAKLRSHSAPKQRPEPKKRLSLNEVMAARNSISSVRMQRPSSNFFQTQESWNF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02310 489 Pfam IQ calmodulin-binding motif 235 249 IPR000048 GO:0005515
Spst4g02310 489 Pfam IQ calmodulin-binding motif 210 229 IPR000048 GO:0005515
Spst4g02310 489 PANTHER IQ-DOMAIN 5-RELATED 95 459 - -
Spst4g02310 489 ProSiteProfiles IQ motif profile. 232 259 IPR000048 GO:0005515
Spst4g02310 489 Pfam Protein of unknown function (DUF4005) 396 471 IPR025064 -
Spst4g02310 489 MobiDBLite consensus disorder prediction 110 142 - -
Spst4g02310 489 ProSiteProfiles IQ motif profile. 208 236 IPR000048 GO:0005515
Spst4g02310 489 SMART iq_5 230 251 IPR000048 GO:0005515
Spst4g02310 489 SMART iq_5 207 229 IPR000048 GO:0005515
Spst4g02310 489 MobiDBLite consensus disorder prediction 110 135 - -
Spst4g02310 489 Gene3D - 150 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02310 Spst-Chr4 63849309 63853726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02310 95 473 IQD Protein Family AT3G16490 55.980 1.53e-112 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02310 - - gmx:100797686 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02310 4 63849309 63853726 Spst4g02310 4 63849309 63853726 ECH
Spst5g00225 5 1955383 1960677 Spst4g02310 4 63849309 63853726 PCT