Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02291 ATGGATGGTATGTGTTGGGATACCTCACAACTTGCAGCAAACACACCAATCCTGTGGAGTACTATTCAGCCACCACCAGACTTTGAAAGAGGCTACTCCATCCCCAATGTTCTCAATCAAATACAAGAGATGCAGAAAGTTCAAACAGGTCATGCAAACTCAAATTCTGAAAGAGTGATTTATCAGTCAGCGGCTGCTACGACCACTTCTTCAGAGATAATGGATGTGATGCAAAAGCAAAACACAAATCTTTCACAGCATGCACCAACCATGATGCCAGCGAAATCAGGAGCTGGATTCAGTTGGGGAGAAGCTTTGACATCTCAATCATACCCGTCTCAATCAGTCAATGGACCTCAAAGTATGAACCTGATTAGCAACCACATGCCAGATTTCAACATGGTCCACCACCACCAACAGCAACAACAACTAGTCAATTCACAAAACGGGAACGGTGCTTGCTCTCTTGAGTCTTTTGAGTGCTTGATTTCAGCTACCAACAGCAACACAGACATGTCTGTTGAAGATGATGGGATCTCAATGATTTTACCCGACTGTAGAAACTTCTGGAACTTCAGTTATGGCAGTGCAGCTTCCACTGGAGAATCTCAGAGTAATGCTTCCAATGGTAGAAACAAAGACATGAAGTGTTCAGCCAATGAAGTTGATGAAACAGTTTCTCAAAGCTCCTTGGATAGAGGAAAAACAGTACAATCAAAGGCTAATTGTTCGAAGAGGGGCCATGAGGAAGCTGAAATGATCAAAGTTGGTGCCACCTGCAGTGATACCTGCTTTAGTATCATTCAGAATTCTTCTTCTATTGAAGAAGGTGGATTCAGACTTATCTCAGATGATCCATCTAAAAGCAAGAAACCCAGATGGGACATGAGTTCAGCTTCAAATAATATCAACTTCCAGCAACCAAATTCATCCATGTCTTCATCCATTGAGGAACCTGATCCAGAAGCCATTGCACAAATGAAGGAAATGATATATAGGGCTGCGGCTTTTAGGCCTGTGAACTTTGGCTTGGATGCAGTTGAAAAGCCAAAGAGGAAGAATGTGAGGATATCAACTGATCCACAAACTGTAGCTGCAAGGCATAGAAGGGAGAGAATAAGTGAGAAGATTAGGGTTTTGCAGAAGCTAGTGCCAGGGGGGGGCAAGATGGACACGGCATCAATGCTTGAGGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTCAAGGCACTGGAATGTCTTGGAAACAAAGTTGATGCAATGAATTGTCCTCCTACAAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACATCTCTCAGTCACATCCATCATTCCCAGAGTTGA 1359 0.4349 MDGMCWDTSQLAANTPILWSTIQPPPDFERGYSIPNVLNQIQEMQKVQTGHANSNSERVIYQSAAATTTSSEIMDVMQKQNTNLSQHAPTMMPAKSGAGFSWGEALTSQSYPSQSVNGPQSMNLISNHMPDFNMVHHHQQQQQLVNSQNGNGACSLESFECLISATNSNTDMSVEDDGISMILPDCRNFWNFSYGSAASTGESQSNASNGRNKDMKCSANEVDETVSQSSLDRGKTVQSKANCSKRGHEEAEMIKVGATCSDTCFSIIQNSSSIEEGGFRLISDDPSKSKKPRWDMSSASNNINFQQPNSSMSSSIEEPDPEAIAQMKEMIYRAAAFRPVNFGLDAVEKPKRKNVRISTDPQTVAARHRRERISEKIRVLQKLVPGGGKMDTASMLEEAANYLKFLRSQVKALECLGNKVDAMNCPPTSIAFSFNPSFPMQTSLSHIHHSQS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02291 452 MobiDBLite consensus disorder prediction 293 317 - -
Spst4g02291 452 Pfam Helix-loop-helix DNA-binding domain 367 406 IPR011598 GO:0046983
Spst4g02291 452 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 357 406 IPR011598 GO:0046983
Spst4g02291 452 MobiDBLite consensus disorder prediction 286 317 - -
Spst4g02291 452 Gene3D - 362 416 IPR036638 GO:0046983
Spst4g02291 452 CDD bHLH_AtIND_like 358 414 - -
Spst4g02291 452 SMART finulus 363 412 IPR011598 GO:0046983
Spst4g02291 452 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 167 443 IPR045843 GO:0003700|GO:0006355
Spst4g02291 452 Coils Coil 396 416 - -
Spst4g02291 452 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 416 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02291 Spst-Chr4 63678755 63680113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02291 97 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.170 2.64e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g02291 HLH 8.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02291 - - vra:106773034 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02291 4 63678755 63680113 Spst4g02291 4 63678755 63680113 ECH