Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02263 ATGGCCAACTTTTGGAATGCAATAGATATGCCACTATGCGTTTCTTTCATTTTTGTTGATTTTCATGAACAACTTATTAACTTTTCCAACTTCGAGTTGTTGCGTGTAAAATTGTTGATGATGATCTTGAATGGATATGCAGATGATTTCTCATGGCTTTGTCTCAAGGATTTTGATATCACTTCTTTCTGTTCACAAAGGACCACCATAGACACTATAAATCTAATTTTTGTCTGTGTCTTTTACGCTTCTACGATTATCAGTTTAATCAGAAGAAATTTTGCAAATGGAAGTCCTAGCAGAAGCAGGTTTTTCCTTTTTGTCTCAATCTGTTGTGCTATTACTAGCATTGTGTTTTACAGTATTGGCGTGTTGAATCTCATAGACAAAGCCGGTAATTCTATGGCTAACCATGTGAGCTGGTTAGCTTGCATTGTAAGAGGATTTGTTTGGACCTCTTTGACAGTTTCTTTGCTTGTTCAGAGACACAAATGGATCAAAATTTTAAACTCTGTCTGGTGGACATGTTCCTGTGCACTAGTTTCAGCTCTCGACACTGAAATTCTGTTTAGAAAGCATGTAATAGAAATTTTCGATGTCCTACTATGGCTCTTACACATGCTTCTTCTTTTTTGTGCCTTCCAAAATCTTGGTTACTTTGTCACTCAAAGTGTACCAAAAAAATTATCTGAGCCATTGTTAGCTCAGGAAGTTGACGCAGAAAAAACAGGACTAGGCCGTGCTTCCTTTCTGAGCAAGTTGACTTTTTCTTGGGTTAACTCCTTACTCAGTCTGGGTTACTCAAAGCCACTTGCCCTTGAAGACATCCCTTCCCTCCTTTCTGAAGATGAAGCAGACATGGCCTACCAAAACTTCATGCATGCATGGGAATCCCTTGTGAGGGAGAGAAGCAATAAGAACAATACCAAGAACTTGGTACTTCGGTCTATTGTTAGAACTCACTTAAAAGAGAACACATTAATAGCTTTTTACGCATTACTCAGAACCATTGCTGTGACTGTTTCTCCTTTAATACTCTATGCTTTTGTCAACTATTCAAATAGTAGGGATACCAGGGATACAGATCTCATGGAAGGTCTTACTATAGTGGGTTTTCTTATTGTGTCAAAAGTGGTTGATTCTGTGTCCCAGAGACATTGTTTTTTTAATTCCAGGAAGTCAGGATTGAAGATGAGATCAGCTCTGATGGTGGCAGTGTATAAAAAACAACTAAAGCTTTCGAGCTCAGCAAGGACAAGACACTCAACAGGTGAAATTGTGAATTACATTGCGGTTGATGCGTATCGCATGGGAGAATTCCCATGGTGGTTTCATATAACATGGGCATCTACTTTGCAACTTCTTCTATCTATTGGTATCCTTTATGGTGTTGTGGGAGTCGGTGCTCTTCTTGGTTTAGTCCCTCTTCTTATATGTGGACTTATCAATGTACCATTTGCAAAGTTCCTACAGAAGTGCATGGCACAGTTCATGATTTCACAGGATGAGCGTCTTAGAGCAACTTCAGAAATTCTAAATAACATTAAAATCATTAAGTTACAGTCCTGGGATGACAAATTCAAGAGTTTGGTTGAGAACCTACGTGATAAAGAGTTCATTTGGTTATCTAAGGCACAAATCGTGAAAGCTTATGGGACATTTCTATATTGGATGTCTCCTACCATCGTTTCTGCTGTTGTTTTCCTCGGTTGTGCTCTTTTCGATAGTGCTCCATTGAATGCTGGGACAATTTTTACAGTTTTGTCAACGTTGAGGAACTTGTCAGAACCTGTTCGAATGATTCCAGAGGCTCTATCTATTATGATCCAAGTTAAGGTATCCTTTGATCGTCTCAATACCATTTTGCTTGACGAAGAACTAGAGAGTAATGATGGTAACAGAAGATATATAAACCGAAGTTCAATTAATGGGGTAGAAATCCAAGCTGGCAACTTCATTTGGGACCACGAAGCAGTACTCCCAACGTTAAAAGATGTCAATTTAGAAATCAAATGGGGAGAGAAAGTTGCGGTTTGTGGGCCAGTTGGAGCTGGGAAATCGTCACTTTTGTATGCAGTACTTGGAGAGATTCCGAAGATTTCAGGATCTGTGAGATTTTACCCAAAATATGGAACAGTTCGAGACAATATACTCTTCGGCAAGCCAATGGAGAAAACAAGATATGCGAGTGCCATTAAAGTTTGTGCTTTAGATAAGGATATCAACGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTACAATGATGCTGACATTTATCTCCTCGATGACCCTTTCAGTGCAGTTGATGCTCATACGGCCGCAATTCTGTTCAATGACTGCGTAATGACGGCTCTAAGAGAGAAAACAGTCATTCTAGTGACACATCAAGTGGAGTTTCTCTCCGAAGTTGATACAATCCTGGTGATGGAAGGTGGAAAAGTTACTCAATCAGGTAATTATGAAAGTCTCTTAGCAGCTGAGACGGCCTTTGAGCAACTTGTGAACGCTCATAAGGAAGCAATTACTGAGTGGGATCAAAATAATGAAAACAAAACTCAGAGAGAAGAGTCTCAAGGCTTTTATCTCACTAAAAACCAAAGCGAGGGGGAGATTTCCACCGAGGGCCAACCTGGGATACAGCTTACACAAGAAGAAGAAAAAGAGATTGGTGATGCTGGGTGGAAGACATTCTTGGATTATATTTCATTTTCCAGGTGTTCATTGATGCTGTCTTTGGTCATGTTGGCACAGGTTACTTTTATTGCTTTGCAGACTGCATCAATGCTTTGGCTTGCTCTAGCCATTGAAATTTCTAAAATAAATAGTGCCACCTTGATTGGGGTGTACTCCTTAATTTCATTTGCTAGTACTGCCTTTGTATATTTAAGGTCTCTCTTTACCTCTTACCTCGGATTAAAAGCTTCAAAAGCTTTCTTTACGAGTTTCACTAATTCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCGACCCCTGTCGGAAGGATTTTAACTAGAGCTTCGTCAGATTTAAGTATTTTGGACTTTGATATACCTTATTCGATCACCTTTGTAGCATCCGTAATAATTGAAATTTTGGTGACAGTTTGTGTAATGGTTTTAGTAACATGGCCAGTTGTCATCGTCGCCATTCCTGCTTTAGTTGCATCAAAATTTGTTCAGGGATATTATCAAGCCTCGTCGAGGGAATTGGTGAGGATCAATGGAACCACAAAAGCTCCTGTGATGAATTTTGCAGCTGAGACATCACATGGTGTGGTTACTGTAAGAGCATTTAATATGGTAGAAAGATTTTTTAAGAAGTACTTAAAGCTTGTGGACACAGACGCAACACTGTTTTTTCATTCTAATGCGGCCATGGAATGGTTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACAGCCATCAGTTCGGCTGTATTGCTTATTCTATTTCCTCAGGAATACGTGTCCCCAGGCCTCGTGGGATTGTCTCTCTCTTATGCTTTAAGCTTGACAGGATCCCAAATATTTTTGACTCGATGGTATTGCAACTTACTGAACTATATTATCTCTGTTGAAAGAATCAAGCAATTCATTCACCTACCGTCAGAGCCTCCTGCCATTGTGAAGGAGCACCGGCCTCCATCCTCATGGCCTTCCAGAGGCAGAATTGATCTTCAAGCTTTAGAGATTAGGTATCGTCCTAATGCTCCATTAGTGCTTAAGGGTATCACTTGTACGTTTAGAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACCGGAAGTGGAAAAAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGAGGTGATATTCTTATAGATGGGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTTTAGGCCTGTACTCAGATGATGATATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACTGTGAGCCATCTACCAAATCTCTTAGACTCTTTGGTGAGTGATGAGGGTGGAAATTGGAGCTTGGGGCAACGGCAACTGTTTTGTCTCGGAAGGGTACTGCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCAACTGCCTCCATTGACTCTGCCACAGATGCTATTCTACAGAGAATTATTAGAGAAGAATTTGCAGAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGACAGTGACATGGTTATGGTCCTCTCCTTTGGGAAAGTGGTGGAATATGATGAGCCTTCAAGACTGATGGACACCAACTCTTCATTCTCCAATCTGGTAGCTGAATACTGGACCAGCTGCAGGAAGAATTCCTCCTCAAATTTTACTTGA 4482 0.4027 MANFWNAIDMPLCVSFIFVDFHEQLINFSNFELLRVKLLMMILNGYADDFSWLCLKDFDITSFCSQRTTIDTINLIFVCVFYASTIISLIRRNFANGSPSRSRFFLFVSICCAITSIVFYSIGVLNLIDKAGNSMANHVSWLACIVRGFVWTSLTVSLLVQRHKWIKILNSVWWTCSCALVSALDTEILFRKHVIEIFDVLLWLLHMLLLFCAFQNLGYFVTQSVPKKLSEPLLAQEVDAEKTGLGRASFLSKLTFSWVNSLLSLGYSKPLALEDIPSLLSEDEADMAYQNFMHAWESLVRERSNKNNTKNLVLRSIVRTHLKENTLIAFYALLRTIAVTVSPLILYAFVNYSNSRDTRDTDLMEGLTIVGFLIVSKVVDSVSQRHCFFNSRKSGLKMRSALMVAVYKKQLKLSSSARTRHSTGEIVNYIAVDAYRMGEFPWWFHITWASTLQLLLSIGILYGVVGVGALLGLVPLLICGLINVPFAKFLQKCMAQFMISQDERLRATSEILNNIKIIKLQSWDDKFKSLVENLRDKEFIWLSKAQIVKAYGTFLYWMSPTIVSAVVFLGCALFDSAPLNAGTIFTVLSTLRNLSEPVRMIPEALSIMIQVKVSFDRLNTILLDEELESNDGNRRYINRSSINGVEIQAGNFIWDHEAVLPTLKDVNLEIKWGEKVAVCGPVGAGKSSLLYAVLGEIPKISGSVRFYPKYGTVRDNILFGKPMEKTRYASAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVTQSGNYESLLAAETAFEQLVNAHKEAITEWDQNNENKTQREESQGFYLTKNQSEGEISTEGQPGIQLTQEEEKEIGDAGWKTFLDYISFSRCSLMLSLVMLAQVTFIALQTASMLWLALAIEISKINSATLIGVYSLISFASTAFVYLRSLFTSYLGLKASKAFFTSFTNSIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVASVIIEILVTVCVMVLVTWPVVIVAIPALVASKFVQGYYQASSRELVRINGTTKAPVMNFAAETSHGVVTVRAFNMVERFFKKYLKLVDTDATLFFHSNAAMEWLVLRIEALQNLTAISSAVLLILFPQEYVSPGLVGLSLSYALSLTGSQIFLTRWYCNLLNYIISVERIKQFIHLPSEPPAIVKEHRPPSSWPSRGRIDLQALEIRYRPNAPLVLKGITCTFREGSRVGVVGRTGSGKSTLISALFRLVEPARGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKALEKCQLKETVSHLPNLLDSLVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIREEFAECTVITVAHRVPTVIDSDMVMVLSFGKVVEYDEPSRLMDTNSSFSNLVAEYWTSCRKNSSSNFT 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02263 1493 SUPERFAMILY ABC transporter transmembrane region 919 1227 IPR036640 GO:0005524|GO:0016020
Spst4g02263 1493 CDD ABC_6TM_ABCC_D1 327 618 IPR044746 GO:0140359
Spst4g02263 1493 CDD ABC_6TM_ABCC_D2 929 1220 IPR044726 GO:0140359
Spst4g02263 1493 SMART AAA_5 1271 1464 IPR003593 GO:0016887
Spst4g02263 1493 SMART AAA_5 672 834 IPR003593 GO:0016887
Spst4g02263 1493 CDD ABCC_MRP_domain1 645 834 - -
Spst4g02263 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 933 1208 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g02263 1493 Gene3D ABC transporter type 1, transmembrane domain 314 618 IPR036640 GO:0005524|GO:0016020
Spst4g02263 1493 Gene3D - 619 884 IPR027417 -
Spst4g02263 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 647 857 IPR003439 GO:0005524
Spst4g02263 1493 FunFam ABC transporter C family member 10 309 626 - -
Spst4g02263 1493 Gene3D ABC transporter type 1, transmembrane domain 897 1226 IPR036640 GO:0005524|GO:0016020
Spst4g02263 1493 Pfam ABC transporter transmembrane region 327 591 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g02263 1493 Pfam ABC transporter transmembrane region 949 1193 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g02263 1493 SUPERFAMILY ABC transporter transmembrane region 314 626 IPR036640 GO:0005524|GO:0016020
Spst4g02263 1493 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 247 1481 - -
Spst4g02263 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 327 610 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g02263 1493 ProSitePatterns ABC transporters family signature. 759 773 IPR017871 GO:0005524|GO:0016887
Spst4g02263 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 857 IPR027417 -
Spst4g02263 1493 Pfam ABC transporter 1262 1410 IPR003439 GO:0005524
Spst4g02263 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1247 1479 IPR003439 GO:0005524
Spst4g02263 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1236 1478 IPR027417 -
Spst4g02263 1493 FunFam ABC transporter C family member 3 1228 1479 - -
Spst4g02263 1493 Gene3D - 1228 1479 IPR027417 -
Spst4g02263 1493 Pfam ABC transporter 663 786 IPR003439 GO:0005524
Spst4g02263 1493 FunFam ABC transporter C family member 5 894 1226 - -
Spst4g02263 1493 CDD ABCC_MRP_domain2 1243 1463 - -
Spst4g02263 1493 FunFam Multidrug resistance-associated protein 4 631 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02263 Spst-Chr4 63408964 63414764 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02263 641 890 Calmodulin-binding Proteins AT2G36910 23.891 6.96e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02263 - - gmx:100784827 2355.87