Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02257 ATGTGGATTGGAACCAGCAACTTTACATTGAAGGGGAAGCCTCAACTGATTCTCCGTTGGTTCTTAAGCCAAGGCTCAAAGTCATCTATGGTAAGCCCCACCCCATTAGTGTCCTATACTTGTTACACAAGTTTTCCCACTTTCAATTACATTCCAAGGTTCCCTTTGCTTCTTCACCCTCAATATTCTCTATCTCACCCTTTCTTTCTCATGAATGTTTTAACCTTAAGACCCGAGGAGGAAACTCCTAAGCTCCTCCATGGTACAATTGAAGCTACCATCTTCAATGCCTCACCTGACTCACCTTTATTTCCCTTCAATTGCTTATGTACAAATGGAAAACCTGCTTATGTGACTATAAAGATAGACAACCAGAAGTTTGCAAAAACCAGTGAAGAAAGCAACCGTGTGTGGAACCAAACCTTTCTGATTCAATGTGCTCATCCAGCTGATTCAGGCATCACCATTACACTGAAAACATCACGTTCTACCATATTGGGGAAGTTCCATATTCAGGCTCAGCAGCTATTGAAGAAAGGAGGTTTGATCAACGGGTTCTTCCCTCTCCTCATGGATAATGGAAAACCAAACCCAAAACTTAAATTGAAGTTTATGTTATGGTTCAAGCCAGCAGATTTGGAACCAAGTTGGGCAAAGATGTTGAGCAATGACTGGGAATTTCAAGGGCTGAAGGAGGCTAGCTTCCCACTAAGGTCCAATTGTCAGGTTAAACTTTATCATGATGCTCACCATTCTTCAGCTTTTCAACCTCCCTTTGATCTTTGTGGAGCTCCAAAGAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAGTATTTAATTTATATTGCTGGCTGGTCCTTCAATCCCATGATGGTTCTGGTTAGAGATCCTCACACAGAAATCCCACATGCCAGAGGAATTAAGTTAGGTGACCTATTAAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGCTTTGGGATGATGAAACATCTTTACCCTTTGTTAAGAACAAAGGTGAATTGAACAACCAAGATGAGGAAGCTTTTGCTTTTTTCAACCACACAAAAGTAATATGCAGAAAGTGTCCAAGATTACACCATATGTTCCCCACACTCTTTGCTCACCATCAGAAGACTATAACAGTGGACATAAAAGTACCCAAATCTAATGACAGAGAGCTTATAAGCTTTGTGGGTGGATTGGATTTGTGTGATGGAAGATATGACACGGAGCAGCATTCATTGTTTCAAACACTCATTAGGGAATCTCATTGTTATGACTTCTACCAAACAAGCATTGAAGGAGCTAGCCTCAACAAAGGAGGGCCAAGGGCACCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGGTGGACGAAGCAGTGTGATCCTTCTTTTCTAGTCCCTTCTAGCACCTTGGCAAATCTTTTGCCTAGGACAAGCTCAAACAATCCTATGGAGAGGAATTGGAATGTTCAAGTATACAGGTCAATTGACCATGTCTCAGTTGGTGAGTTGTCTACAAAGTCAACTGTGGAGAGGAGCATCCATGAAGCTTATGTTGAAGCAATCAGGCGAGCTGAAAGGTTTATATACATTGAAAGCCAATATTTCATTGGGGGATGCCATTGGTGGAAGAAAGATAGGCACTGTGGCTGCACTAATCTAATTCCTATTGAAATTGCACTGAAGGTGGTAAGTAAGATCAAGGCAAAGGAGAGATTTGCTGTGTACATAGTCCTACCAATGTGGCCAGAAGGAGAGCCTGAAAGTGAACCTGTTCAAGATATACTGCATTGGACTAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAAGCAATACAAGAAAGTGGACAACCAGGACACCCTAGAGATTACTTGAATTTCTTCTGTCTTGCAAACAGGGAACAGAAGGGACCAGGGGAGTATCTTCCACTAGATTCACCCCAACCTGAAACTCAATACTGGAATGCTCAAAAAAATAGGAGATTCATGGTTTGTGTTCAGTCCAAGTTCATGATAGTGGACGACCTATACATATTGATAGGATCAGCTAATGTGAACCAAAGATCGATGGATGGGCAAAGGGACACTGAGATGGCCATAGGATGCTACCAGTCTCAAGATGGAGATGATGACCACCAAATGAACCTAGATGATATTCAAGCATATAGAATGTCTCTATGGTATGAGCACACAGTGAGTGTTGAAGAGTTGTTCTTGGAGCCAGAAAGATTGGAATGTGTGGAGAGAATGAGATCAATAGGAGATGAAATGTGGGAAATCTACAGCAATGAAGAAATTAAGGACATGGAAGGTGTGCATCTTGTGACTTACCCTGTGAAAGTAACAGCAGAAGGGTATGTGAAGGACATCAGTGATGGAGTTCATTTTCCAGATACAAATTCTCTGGTGAAAGGCAAAAGGTCAAAAATATTACCCCCTATCTTTACCACTTAG 2517 0.4188 MWIGTSNFTLKGKPQLILRWFLSQGSKSSMVSPTPLVSYTCYTSFPTFNYIPRFPLLLHPQYSLSHPFFLMNVLTLRPEEETPKLLHGTIEATIFNASPDSPLFPFNCLCTNGKPAYVTIKIDNQKFAKTSEESNRVWNQTFLIQCAHPADSGITITLKTSRSTILGKFHIQAQQLLKKGGLINGFFPLLMDNGKPNPKLKLKFMLWFKPADLEPSWAKMLSNDWEFQGLKEASFPLRSNCQVKLYHDAHHSSAFQPPFDLCGAPKKLWEDVYKAIEGAKYLIYIAGWSFNPMMVLVRDPHTEIPHARGIKLGDLLKKKAEEGVAVRVMLWDDETSLPFVKNKGELNNQDEEAFAFFNHTKVICRKCPRLHHMFPTLFAHHQKTITVDIKVPKSNDRELISFVGGLDLCDGRYDTEQHSLFQTLIRESHCYDFYQTSIEGASLNKGGPRAPWHDAHACVIGEAAWDVLTNFEQRWTKQCDPSFLVPSSTLANLLPRTSSNNPMERNWNVQVYRSIDHVSVGELSTKSTVERSIHEAYVEAIRRAERFIYIESQYFIGGCHWWKKDRHCGCTNLIPIEIALKVVSKIKAKERFAVYIVLPMWPEGEPESEPVQDILHWTRETMAMMYRLIGEAIQESGQPGHPRDYLNFFCLANREQKGPGEYLPLDSPQPETQYWNAQKNRRFMVCVQSKFMIVDDLYILIGSANVNQRSMDGQRDTEMAIGCYQSQDGDDDHQMNLDDIQAYRMSLWYEHTVSVEELFLEPERLECVERMRSIGDEMWEIYSNEEIKDMEGVHLVTYPVKVTAEGYVKDISDGVHFPDTNSLVKGKRSKILPPIFTT 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02257 838 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 113 225 IPR035892 -
Spst4g02257 838 SMART pld_4 376 412 IPR001736 GO:0003824
Spst4g02257 838 SMART pld_4 683 710 IPR001736 GO:0003824
Spst4g02257 838 SUPERFAMILY Phospholipase D/nuclease 235 485 - -
Spst4g02257 838 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 376 412 IPR001736 GO:0003824
Spst4g02257 838 Pfam Phospholipase D Active site motif 377 412 IPR001736 GO:0003824
Spst4g02257 838 Gene3D C2 domain 96 209 IPR035892 -
Spst4g02257 838 Gene3D Endonuclease Chain A 254 506 - -
Spst4g02257 838 PANTHER PHOSPHOLIPASE D 85 820 IPR015679 -
Spst4g02257 838 SUPERFAMILY Phospholipase D/nuclease 505 766 - -
Spst4g02257 838 Gene3D Endonuclease Chain A 523 735 - -
Spst4g02257 838 Pfam C2 domain 116 189 IPR000008 -
Spst4g02257 838 PIRSF PLD_plant 80 838 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Spst4g02257 838 Pfam Phospholipase D C terminal 756 827 IPR024632 -
Spst4g02257 838 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 683 710 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02257 Spst-Chr4 63368209 63375240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02257 108 838 Phospholipase D Gene Family (Wang group) AT1G55180 61.373 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02257 K01115 - gmx:100812642 1482.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02257 4 63368209 63375240 Spst4g02257 4 63368209 63375240 ECH
Spst5g00252 5 2266131 2268970 Spst4g02257 4 63368209 63375240 PCT