Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02239 ATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCCTCAGGCAACAGAACCGAGATTGGAACCAGTTACCCTCAACAATACTTGGCTCCACCACCACCAACTCAGACTCAACCAGCAAAGAAAAAGAGAAACCTTCCTGGAAACCCAGACCCTGATGCTGAGGTTATAGCCTTGTCCCCCAAGAGTCTTCTGGCCACAAATCGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAACCTCCAACTTCACAGAAGAGGGCATAATTTGCCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAGCCAAATTGTGTGCATCATGACCCATCAAGGGCTCTGGGGGACCTAACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCCCATTCCAAGACCTGTGGCACTAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGTAA 555 0.4721 MSNLTSASGEASASSGNRTEIGTSYPQQYLAPPPPTQTQPAKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02239 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Spst4g02239 184 MobiDBLite consensus disorder prediction 1 26 - -
Spst4g02239 184 FunFam protein indeterminate-domain 12-like 50 118 - -
Spst4g02239 184 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Spst4g02239 184 SMART c2h2final6 112 142 IPR013087 -
Spst4g02239 184 SMART c2h2final6 71 93 IPR013087 -
Spst4g02239 184 SMART c2h2final6 147 167 IPR013087 -
Spst4g02239 184 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Spst4g02239 184 MobiDBLite consensus disorder prediction 1 55 - -
Spst4g02239 184 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Spst4g02239 184 Gene3D Classic Zinc Finger 68 169 - -
Spst4g02239 184 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 184 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02239 Spst-Chr4 63172793 63173488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02239 1 184 IDZ Gene Family AT3G13810 78.061 3.72e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst4g02239 zf-C2H2_jaz 2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02239 K25870 - gmx:100785687 347.821