Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02232 ATGGGCTTGGGTGGTACTATTGGCAAGATGAGCCTAGGAGAGCCCATATTGAAACGACCACGTTTCCATGTAGTGTTGTTGGCATTGATCAGAGGTCAACTCAACAACACCAGCTTCAAACTTAAACTCACCTCAACGTCCACTTGCTGTTACCACCTCGTCCTTTGCAAAAACGTGTTCTTTTCTCAAATGGGTGGTTCAGGAAGATGGCTTAAGTCGCTCATTTCTCTCAGGAAGCCCTCCACAACTGATCAAGAGAAGGGTGGTGATAAGAGTAAGAGAAAGTGGAAGTTATGGAGAGGCACTTTAGAAGGGTTTGGGATTGGAATCTCATCCATGCAGAAGGAGCAGGGTGGTGGTGGGTCCTTGGTGGTGGATGATGGAGCATTTGCTGCTGCTTTGGCTGCTGTGGTAAGGACTCCACTCAAAGACTTCATGGTCATCAAGCAGGAATGGGCTGCCATTCGAATCCAGGCAGTGTTTCGAGGTTTCTTGGCAAGACGAGCTTTGAGGGCCCTGAGGGCAGTGGTGAGGTTGCAAGCTATATTTCGCGGTTGGCAAGTGAGAAAGCAAGCAGCTGTTACTTTAAGATGCATGCAGGCTCTTGTGCGAGTTCAAGCCCGCGCCAAGGCAAGGAATGTGGGGAAAGCTGTGAGTGACCCCTGCAATGAAGCTGATCCTGTTAAGCAAGCTGAGCAAGGATGGTGTGACATTCCAGGAACTGCGGGAGAAGTTAAGGCAAAGTTACAAATGAGGCAGGAAGGAGCAATTAAGAGGGATAGGACAAAGGCATACTCTCAGTCTAAGCAGAAATCAACAGTGAGTGCTAGTCCAAACTCAAGAGCTTCTAAGCCAGTGACTCCTCTCAAGCACCGCAGCGTAGATAGAAAGAGCTCAGGATGGGGCATGTTAGATCGCTGGATGGCTGCAAAGCCATGGGAGAGCAGGTCGATGGTAGACATGTATTTGGACTCATCTGACATGACTCCAGTGACTAGTAAAAGTGATCATTTTGTTCTTCCCTTTAATTCTGATCTACAAAATGGCTCAGTCAGAGCAAAAAGGAATGGTGTGACAACCAGGGTTTCATCTAAATCACTTACAACTAGTCAATCAACTCCATCATCTTCATCCATAAGCTCTGAATGCATGTATGATGATAGCCCTTTGTCAACTTCATGCACATCTGAATCACCTGTACCACCTACCAACAATGTTATGGTTGAAGCAACAGAAGAAAGAAATGTTTGTAAGCCAAGCTACATGAATCTGACAGCATCAACCAAAGCTAAACTTAAACCCTATCGGTTTTTTTCTCAGAATTCGAAGAGAATATTTATGGATGATTGTGTGTCACTAAGTGGAGTTACTAGAAGCAGTTCTGGTTCCTATCCTTCTGCCAATATGTGGAAGAATATCTATGCAACACCTTTAAGGACAAGTTATGAAAAACGATATACATTGGAAGATAAGTAG 1476 0.4526 MGLGGTIGKMSLGEPILKRPRFHVVLLALIRGQLNNTSFKLKLTSTSTCCYHLVLCKNVFFSQMGGSGRWLKSLISLRKPSTTDQEKGGDKSKRKWKLWRGTLEGFGIGISSMQKEQGGGGSLVVDDGAFAAALAAVVRTPLKDFMVIKQEWAAIRIQAVFRGFLARRALRALRAVVRLQAIFRGWQVRKQAAVTLRCMQALVRVQARAKARNVGKAVSDPCNEADPVKQAEQGWCDIPGTAGEVKAKLQMRQEGAIKRDRTKAYSQSKQKSTVSASPNSRASKPVTPLKHRSVDRKSSGWGMLDRWMAAKPWESRSMVDMYLDSSDMTPVTSKSDHFVLPFNSDLQNGSVRAKRNGVTTRVSSKSLTTSQSTPSSSSISSECMYDDSPLSTSCTSESPVPPTNNVMVEATEERNVCKPSYMNLTASTKAKLKPYRFFSQNSKRIFMDDCVSLSGVTRSSSGSYPSANMWKNIYATPLRTSYEKRYTLEDK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02232 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 192 IPR027417 -
Spst4g02232 491 Pfam IQ calmodulin-binding motif 174 191 IPR000048 GO:0005515
Spst4g02232 491 Pfam IQ calmodulin-binding motif 152 171 IPR000048 GO:0005515
Spst4g02232 491 ProSiteProfiles IQ motif profile. 174 201 IPR000048 GO:0005515
Spst4g02232 491 SMART iq_5 149 171 IPR000048 GO:0005515
Spst4g02232 491 SMART iq_5 172 193 IPR000048 GO:0005515
Spst4g02232 491 MobiDBLite consensus disorder prediction 351 384 - -
Spst4g02232 491 MobiDBLite consensus disorder prediction 256 296 - -
Spst4g02232 491 PANTHER IQ-DOMAIN 5-RELATED 64 466 - -
Spst4g02232 491 Gene3D - 148 202 - -
Spst4g02232 491 ProSiteProfiles IQ motif profile. 150 178 IPR000048 GO:0005515
Spst4g02232 491 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02232 Spst-Chr4 63038202 63041192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02232 64 474 IQD Protein Family AT1G72670 45.581 2.75e-87 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02232 - - vun:114166337 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00287 5 2517869 2519886 Spst4g02232 4 63038202 63041192 PCT