Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02227 ATGGTCCACATTGTTTCTTATGGTAAACTGGTGAAAGACAGAGAGACTGCTCTGCTGCAAAAGGATCAAACCATTCAAGCTCATAAAATGACTTACTTTGGGATTAGCATAGCTCTCAACATTGAAATCATGTTCAAAGAGCATACAGTTGAACTTTTTGAAATGGTACAATGGCTTGTACATTTCTTACTTCTCTTTTGTTCGTTTCAAAATCTCGGTTGTTTTGTCACATTCCGAAGTATCCAAGAAGACATTGCAAGTTTATCTGAGCCTCTGATTGCTCAAAAAGTTGAAACTACACAAACACAACTAGGGCGTGCTACCCTTCTCAGTAAGTTGACTTTCTCTTGGGTTAATTCTTTACTCAGACTGGGGTACTCAAAGCCACTAGCTGTTGAAGATATCCCATCTCTTCTTCCAGAAGATGAAGCGAACTTGGCCTACCGAGACTTTATGCATGCATGGGAGTCTGTTGTAAGGGAGAGTAGCAATAATAACAACAAAAACTTGGTTCTTTGGTCTGTAGCTAGGACTTTCTCCAAGGAGAACTTATTATTAGCATTTTACGCATTAGTCAGAAGTATTTGCATGATAATTTCTCCTCTAATACTCTATTCTTTTGTAAACTACTCAAATAGCGCTGAGGCAGATCTCAAAGAAGGTTTTTCTATACTGGGTTTTATGATTCTCAGCAAAGTGGTTGAGTCTTTGTGCCAGAGACATTACGGTTTTGGCTCAAGGAGATCAGGAATGAAAATTAGATCAGCTCTGATGGTGGCAGTGTATCAGAAACTGCTAAAGCTTTCTAGCTCAGCAAGGACAAGGCACTCAACTGGAGAAGTTGTGAATTACATTGCAGTTGATGCATATCGATTGGGAGAATTTCCGTGGTGGTTTCATGTAGCATGGACTTCTGCAGTGCAACTTGTTTTGTCCATCGTTCTCCTTTTTAGTATTGTGGGTGCTGGTGCTCTTCCAGGTTTAATCCCTCTTCTCATTTGTGGACTTCTCAATGTACCCTTTGCAAAGATCATACAAAGTTGCCAGTCTCAATTCATGATGGCACAAGATGAGCGTCTCAGATCAACTTCAGAAATTCTAAATAGTATGAAAATCATCAAGTTACAATCCTGGGAAGAAAAATTCAAGAACATAGTGTTGTCCCTACGTGCTAAAGAATTCAAATGGTTGTCTAAGGTACAGATGATAAAAGCTAATGGGGGATTTCTATATTGGATGAATCCCACCATTGTTCCTACTGTTGTTTTCCTCGGGTGTGCTCTTTTCAACAGTGCCCCACTGAATGCTGGGACCATTTTCACCGTTATCACAACATTGAGGATAATGGGAGAACCTGTGCGATTGATCCCAGAGGCTCTATCTATTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATACCTTTTTGCTTGATGAAGAGCTAGATAGTATTAATGGTTATGGAAGAAGTATAAAGCATACTTCAGTTAATGCAGTGGAAATCCAGGAAGGCAACTTCATTTGGGATCATAAATCAATGTCTCCAACTTTAAGAGAGGTGAAGTTAGAAATCAAATGGGGACAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAGTACTTGGAGAGATTCCCAAGATCTCAGGAACTGTTAATGTTGGTGGAACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGAAAGCCAATGAACAAAACCAGATATGAGAGTGCCACTAAAGTTTGTGCCTTAGATATGGATATTAATGATTTTAGCCATGGTGATCTTACCGAAATAGGCCAGCGAGGTATCAACATGAGTGGAGGACAAAGGCAAAGGATTCAACTAGCTCGAGCAGTTTATAATGATGCTGACATCTATCTCCTTGATGACCCATTCAGTGCAGTTGATGCACAAACAGCTGCTATTCTGTTCCATGACTGTGTCATGACTGCTTTAAGAGAGAAAACAGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCTGAAGTTGATACGATCCTGGTGATGGAGGATGGAAAAGTTACTCAATCAGGTAGTTACGAAGATCTCCAGTCAACTGGCACTGCCTTTGAACAACTTGTGAGTGCCCATAAAGCTGCGTTAACTGGATTGGATAGAAAAAATGAAAATAATAGTTATTATGATATTGAAGCTATGGTACATCCAGAAGAATCTCAAAGTTTTAATCTCACTAAAAATCAAAGTGAGCAGGTGATTTCTAGCAAGGGACAACTTGGGCCACAACTTACACAGGAAGAAGAAAAAGAGATTGGTGATATTGGGTGGAAACAATTCTGGGACTATATTTCATTTTCCAGGGGCTCATTCTTGCTTTGTTTAACCATGTTAGCACAGTTTGCTTTTATTGCTTTGCAGACTGCATCAACGTATTGGCTTGCTCTAGCTATTGAAATTCCAGAAGTAACCAGTGGCATTTTGATAGGAGTTTACGCATCATTTTCATTTCTCAGTGCTATATTTATATATATAAGGTCTTTCCTAGCTGCTTATCTTGGATTAAAAGCTTCTGAAGCCTTCTTCTCAAGTTTCACGTCAGCTATCTTCAATGCTCCTATGTTGTTCTTTGACTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGATTTAAGTGTTTTGGACCTTGATATTCCTTATTCTCTCACTTTAGTATCATTTGTAGCAGCTGAAATTCTAGTGACAATATGTGTAATGGCATCAGTCACATGGCAAGTTCTTATTATTGCTGTTCCGGCTACAGTGACATCAATATATATTCAGGAATATTATCTAGCCTCTTCAAGGGAATTGATGAGGATCAATGGAACCACAAAAGCTCCAGTCGTGAATTATGCTGCCGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTGAACATGGTGAACAGATTTTTCAACAACTACCTAAAGCTTGTGGACATGGATGCAACACTGTTCTTTCACTCTAATGTGACCATGGAATGGTCAATTTTAAGAATTGAAATACTTCAAAACTTGACAGTCTTCACAGCAGCTTTATTACTTATTCTACTTCCCAAGGGATATGTATCATCAGGTCTTGTGGGATTGTCTCTTTCTTATGCGTTGACATTGAAAGAATCCCAAGTATTTTGGAGTCGGATGTTTAGCATGTTATCAAACCAAATAATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCAGAGCCTCCTGCCATTGTGGAGGATTACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATCGATGTTCGATCCGTAGAGATTAGATACCGTCCAAATGCTCAATTAGTCCTCAAGGGTATAAATTGTACGATTATAGAAGGGAGTAAAGTGGGAGTTGTTGGAAGAACTGGAAGTGGCAAAACTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAACCTTCAAGAGGTGATATTCTAATAGATGGGATTAACATATGCTTGATGGGGTTAAAGGATTTGAGGATGAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAAGACCAACTTGGACCCTCTGGGCATCTATGAAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAACTAAAGGAAACAATTAGCAAACTACCAGGTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGCCAACTGTTTTGCCTTGGTAGAGTACTACTTAAGAGGAACAAAATACTGGTCCTAGATGAAGCTACTGCATCCATTGACTCTGCAACAGATGTCATTCTACAACAAGTAATAAGAAAAGAATTTGCAGAATGCACAGTCATAACTGTGGCTCACAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTGTCTTATGGGAAACTAGTGGAATATGACGAGCCTTCAAAACTTATCGGGACCAACTCTTGGTTCTCTAAATTGGTTGCTGAATATTGGTCGAGCTGTAGGAAGAACTCATCCGCAAATATTAGTAGGAAGTATATTGAACAATAA 4122 0.3952 MVHIVSYGKLVKDRETALLQKDQTIQAHKMTYFGISIALNIEIMFKEHTVELFEMVQWLVHFLLLFCSFQNLGCFVTFRSIQEDIASLSEPLIAQKVETTQTQLGRATLLSKLTFSWVNSLLRLGYSKPLAVEDIPSLLPEDEANLAYRDFMHAWESVVRESSNNNNKNLVLWSVARTFSKENLLLAFYALVRSICMIISPLILYSFVNYSNSAEADLKEGFSILGFMILSKVVESLCQRHYGFGSRRSGMKIRSALMVAVYQKLLKLSSSARTRHSTGEVVNYIAVDAYRLGEFPWWFHVAWTSAVQLVLSIVLLFSIVGAGALPGLIPLLICGLLNVPFAKIIQSCQSQFMMAQDERLRSTSEILNSMKIIKLQSWEEKFKNIVLSLRAKEFKWLSKVQMIKANGGFLYWMNPTIVPTVVFLGCALFNSAPLNAGTIFTVITTLRIMGEPVRLIPEALSIMIQVKVSFDRLNTFLLDEELDSINGYGRSIKHTSVNAVEIQEGNFIWDHKSMSPTLREVKLEIKWGQKIAVCGPVGAGKSSLLYAVLGEIPKISGTVNVGGTIAYVSQTSWIQSGTVRDNILFGKPMNKTRYESATKVCALDMDINDFSHGDLTEIGQRGINMSGGQRQRIQLARAVYNDADIYLLDDPFSAVDAQTAAILFHDCVMTALREKTVILVTHQVEFLSEVDTILVMEDGKVTQSGSYEDLQSTGTAFEQLVSAHKAALTGLDRKNENNSYYDIEAMVHPEESQSFNLTKNQSEQVISSKGQLGPQLTQEEEKEIGDIGWKQFWDYISFSRGSFLLCLTMLAQFAFIALQTASTYWLALAIEIPEVTSGILIGVYASFSFLSAIFIYIRSFLAAYLGLKASEAFFSSFTSAIFNAPMLFFDSTPVGRILTRASSDLSVLDLDIPYSLTLVSFVAAEILVTICVMASVTWQVLIIAVPATVTSIYIQEYYLASSRELMRINGTTKAPVVNYAAETSLGVVTVRALNMVNRFFNNYLKLVDMDATLFFHSNVTMEWSILRIEILQNLTVFTAALLLILLPKGYVSSGLVGLSLSYALTLKESQVFWSRMFSMLSNQIISVERIKQFIHIPAEPPAIVEDYRPPSSWPSKGRIDVRSVEIRYRPNAQLVLKGINCTIIEGSKVGVVGRTGSGKTTLISALFRLVEPSRGDILIDGINICLMGLKDLRMKLSIIPQEPTLFKGSIKTNLDPLGIYEDDEIWKALEKCQLKETISKLPGLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNKILVLDEATASIDSATDVILQQVIRKEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLIGTNSWFSKLVAEYWSSCRKNSSANISRKYIEQ 1373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02227 1373 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 502 723 IPR003439 GO:0005524
Spst4g02227 1373 Pfam ABC transporter 1136 1284 IPR003439 GO:0005524
Spst4g02227 1373 SUPERFAMILY ABC transporter transmembrane region 172 473 IPR036640 GO:0005524|GO:0016020
Spst4g02227 1373 FunFam ABC transporter C family member 5 768 1100 - -
Spst4g02227 1373 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 184 465 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g02227 1373 CDD ABC_6TM_ABCC_D2 801 1094 IPR044726 GO:0140359
Spst4g02227 1373 Pfam ABC transporter 518 652 IPR003439 GO:0005524
Spst4g02227 1373 Gene3D - 478 744 IPR027417 -
Spst4g02227 1373 SUPERFAMILY ABC transporter transmembrane region 792 1101 IPR036640 GO:0005524|GO:0016020
Spst4g02227 1373 CDD ABCC_MRP_domain2 1117 1337 - -
Spst4g02227 1373 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 106 1355 - -
Spst4g02227 1373 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1121 1353 IPR003439 GO:0005524
Spst4g02227 1373 Gene3D ABC transporter type 1, transmembrane domain 171 477 IPR036640 GO:0005524|GO:0016020
Spst4g02227 1373 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 807 1082 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g02227 1373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 722 IPR027417 -
Spst4g02227 1373 Pfam ABC transporter transmembrane region 186 450 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g02227 1373 Pfam ABC transporter transmembrane region 806 1065 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g02227 1373 FunFam ABC transporter C family member 3 1102 1353 - -
Spst4g02227 1373 CDD ABCC_MRP_domain1 500 700 - -
Spst4g02227 1373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1110 1352 IPR027417 -
Spst4g02227 1373 FunFam Multidrug resistance protein associated1 478 743 - -
Spst4g02227 1373 CDD ABC_6TM_ABCC_D1 185 473 IPR044746 GO:0140359
Spst4g02227 1373 Gene3D - 1102 1352 IPR027417 -
Spst4g02227 1373 FunFam ABC transporter C family member 10 167 481 - -
Spst4g02227 1373 ProSitePatterns ABC transporters family signature. 625 639 IPR017871 GO:0005524|GO:0016887
Spst4g02227 1373 Gene3D ABC transporter type 1, transmembrane domain 771 1100 IPR036640 GO:0005524|GO:0016020
Spst4g02227 1373 SMART AAA_5 1145 1337 IPR003593 GO:0016887
Spst4g02227 1373 SMART AAA_5 527 700 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02227 Spst-Chr4 62991441 63001345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02227 481 727 Calmodulin-binding Proteins AT2G36910 26.996 1.40e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02227 - - pvu:PHAVU_010G136900g 2330.06