Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02224 ATGACACGGGGGAGGATAAGGGCGAGGCTCCGGAGGAGCCATCTTTACACATTTAGTTGCCTTAAGCCTTCTACCGTTGAGGAGGCACCTCATCCACTTCAAGGTCCCGGGTTCTCGCGAACTGTGTATTGCAATCAGCCTCTTCTCCACGAAAAGAAGCCTCTTTATTATTGTAGGAATGATATATCCACGACTAAGTACAATGTTCTTACGTTTTTCCCCAAGGCACTCTTTGAACAATTCCGCAGGGTTGCTAATATATACTTCCTTTTGGCTGCGTGTCTCTCAGCCTCTCCAATTTCACCTTTCAGCCCACTGAGCATGATTGCTCCTTTGGCATTTGTTGTGGGGCTCAGCATGGCAAAGGAAGCATTGGAAGATTCTCGTAGGTTCGTTCAGGATGTCAAAGTTAATCGCCGAAAAGTTAATCGTCATAAAAGCGATGGTGCTTTTGGTCCCAGGTCGTGGCAGAGCATTATGGTTGGGGATGTGCTAAAAGTGAAAAAGGATCAATTTTTTCCAGCTGATTTGCTTCTGCTGTCATCAAGTTATGAGGATGGGATATGCTATGTGGAGACTATGAATTTAGATGGTGAGACCAACTTGAAGGTGAAAAGATCTTTGGAGGCTACCTTGAATCTAGATAATGACGAAGTTTTTAAAGATTTCGCTGGGACAATACGTTGTGAAGACCCAAACCCCAATCTTTACACATTTGTTGGAAACTTAGAGTATGAGCGCCAGATTTATCCTCTTGATCCTAGTCAAATTCTTCTCCGAGATTCTAAGCTCAGGAATACCGAGTACATCTATGGGGTGGCCATTTTCACTGGTCATGATAGCAAAGTCATGCAAAATTCAACAAAATCCCCTTCAAAAAGAAGCACAATAGAAAAGAAGATGGATTATATCATATACACCCTCTTCACTGTCCTTATTTTGATATCTGTTATTAGTTCCATAGGATTTGTCATCAAGACCAAGTACCAAACCCCAACTTGGTGGTATTTACGGCCGGACAATATTGAATACCAGTATGATCCCAAGAAAGTTGGAGTAGCTGGAATGAGTCATCTGGTTACTGCGCTCATTCTTTATGGATATTTGATACCCATCTCACTTTATGTTTCCATCGAGGTTGTAAAGGTTTTACAAGCAACCTTCATCAACCAAGACATTCAAATGTATGATGAAGAAACTGGGACTCCAGCTGATGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGATACTATCCTGTCAGATAAAACTGGAACTTTGACCTGTAATCAGATGGACTTTCTGAAGTGCTCCATTGCTGGTACTGCATACGGTGTGCGCTCCAGCGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAGGACCAGGATTCAGATCTCTCCAATTTCCCCCTGCCTAAGGCTAAAATGCAAGTTTCATGGGATAATGTTAAAAAAGATGAAGAAATTGGACTGGATGCTGTTGTTACTTCCAAAGGAGATGATGATCAAAAGCGTGCCATAAAGGGATTTGGTTTTGAAGATGACCGCCTTATGAATTGTAATTGGTTGAAAGAGCCCAATGCTGATGACCTTTTAATGTTCTTCCGAATACTAGCAGTTTGCCACACTGCCATTCCCGAGCTGAATGAGGAGACTGGTGTTTTTACATATGAAGCTGAGTCACCTGATGAAGGGGCTTTTCTTGTTGCAGCAAGAGAATTTGGCTTTGAGTTTTGCAGAAGAACTCAGTCAAGTATTTTCATACATGAAAGGTTTTCTGCTTCTAGACAAGTGGTTGAAAGAGAGTACAAACTTTTGAATCTGCTGGATTTTACTAGTAAAAGAAAACGAATGTCAGTGATTGTGCGTGATGAGGAGGGCAGTATCTTTCTTATGTGCAAAGGAGCTGACAGTATCATATTTGATCGCATGTCAAAGAATGGAAAAATGTATTTGGAGGCTACTACCAAACATCTAAATGAATACGGAGAAGCTGGTTTGAGAACACTAGCCCTGGCTTATAGAAAGCTGGATGAGCAGGAATACTCTGCATGGAACAATGAATTTCATAAAGCCAAATCAGCTGTTGGGGCTGACAGAGATTCAATGCTTGAGCGAGTATCAGATATGATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAACTGCAGAAAGGGGTTCCCCAGTGTATTGATAATCTTGCTCAAGCTGGTCTTAAGATCTGGGTGTTGACAGGGGATAAGATGGAAACAGCAATCAACATTGGATTTGCTTGCAGTTTGCTACGACAGGGCATGAAGCAGATCTGTATAACTACTCCGGTTTCAGATTCTGTAGCCAGCGATGTCAAACAGGCCATCAAGGATAACATTTCAAACCAACTTACCAATGCTTCCCAAATGATAAAACTGGAGAAGGATCCTCATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTGACATATACTTTAGAAGATGATATGAAGCACCAATTTTTGGCATTGGCAGTTGATTGTGCATCTGTAATCTGTTGTCGTGTGTCTCCCAAGCAAAAGGCATTGGTAACAAGGTTAGTGAAACAAGGTACTGGGAAGACTACTCTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCAGATATTGGTGTTGGGATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTGCAGTTGCCCAATTTCGATTTCTAGAGAGGCTTCTGGTAGTCCATGGACATTGGTGTTACAAGCGAATTGCACAAATGATATGTTATTTCTTCTACAAGAATATTGCATTTGGCCTCACCATCTTCTATTTTGAGGCCTTCACAGGCTTCTCTGGTCAATCAGTTTATGATGATTGGTATATGATATTGTTCAATGTTGTTCTGACATCATTACCTGTTATTTCACTCGGTGTTTTTGAACAAGATGTTCCATCAGAAGTTTGTTTACAGTTTCCTGCACTATATCAACAAGGACCCAAAAATTTATTCTTTGACTGGTATAGAATATTGGGATGGATGGGCAATGGTCTCTATTCCTCCCTCATCATCTTTTTTCTCATCGTCACCATCTTCTACGACCAAGCATTTCGTGCTGATGGCCAGATAGCTGATATGGCTGTTGTTGGGACCACTATGTTCACTTGCATCGTCTGGGCTGTCAACTGTCAGATTGCGTTGACGATGAGCCACTTTACATGGATTCAGCATCTGTTTGTATGGGGAAGCATAGCCACTTGGTACATTTTTCTCCTGTTGTATGGAATGCTTTCCCCAGAATACTCCAAGAGCGCCTACCAAATACTGGCTGAAGCTCTTAGTCCTGCTCCTATTTATTGGATAACAACCCTTTTAGTTTCAGTTACTTGCAATCTTCCTTATTTTGTCCATATATCCTACCAAAGATGTTTCTATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAAAAGGATATTGAAGACCAACACATGTGGACAAGAGAGCGTTCTAAAGCCAGACAGGAAACCAAGATTGGTTTCACAGCAAGAGTGGAAGCAAAGATCAGGCAACTGAAAGGAAGGCTGCAGAAGAAGCAAACCATGACTATTTCGGCCCCATCGTGA 3672 0.4183 MTRGRIRARLRRSHLYTFSCLKPSTVEEAPHPLQGPGFSRTVYCNQPLLHEKKPLYYCRNDISTTKYNVLTFFPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFVQDVKVNRRKVNRHKSDGAFGPRSWQSIMVGDVLKVKKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEATLNLDNDEVFKDFAGTIRCEDPNPNLYTFVGNLEYERQIYPLDPSQILLRDSKLRNTEYIYGVAIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISVISSIGFVIKTKYQTPTWWYLRPDNIEYQYDPKKVGVAGMSHLVTALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQMASDLEDQDSDLSNFPLPKAKMQVSWDNVKKDEEIGLDAVVTSKGDDDQKRAIKGFGFEDDRLMNCNWLKEPNADDLLMFFRILAVCHTAIPELNEETGVFTYEAESPDEGAFLVAAREFGFEFCRRTQSSIFIHERFSASRQVVEREYKLLNLLDFTSKRKRMSVIVRDEEGSIFLMCKGADSIIFDRMSKNGKMYLEATTKHLNEYGEAGLRTLALAYRKLDEQEYSAWNNEFHKAKSAVGADRDSMLERVSDMMERELILVGATAVEDKLQKGVPQCIDNLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITTPVSDSVASDVKQAIKDNISNQLTNASQMIKLEKDPHAAFALIIDGKTLTYTLEDDMKHQFLALAVDCASVICCRVSPKQKALVTRLVKQGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAVAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLIIFFLIVTIFYDQAFRADGQIADMAVVGTTMFTCIVWAVNCQIALTMSHFTWIQHLFVWGSIATWYIFLLLYGMLSPEYSKSAYQILAEALSPAPIYWITTLLVSVTCNLPYFVHISYQRCFYPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRQLKGRLQKKQTMTISAPS 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02224 1223 Gene3D - 113 288 - -
Spst4g02224 1223 FunFam Phospholipid-transporting ATPase 724 921 - -
Spst4g02224 1223 NCBIfam phospholipid-translocating P-type ATPase 57 1167 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Spst4g02224 1223 FunFam Phospholipid-transporting ATPase 591 722 - -
Spst4g02224 1223 SFLD Haloacid Dehalogenase 405 932 - -
Spst4g02224 1223 SUPERFAMILY Calcium ATPase, transduction domain A 146 286 IPR008250 -
Spst4g02224 1223 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 686 IPR023299 GO:0000166
Spst4g02224 1223 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Spst4g02224 1223 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 32 1183 - -
Spst4g02224 1223 Pfam Cation transport ATPase (P-type) 546 651 - -
Spst4g02224 1223 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Spst4g02224 1223 Gene3D - 419 433 IPR023214 -
Spst4g02224 1223 Gene3D - 590 723 IPR023299 GO:0000166
Spst4g02224 1223 Gene3D - 434 470 IPR023299 GO:0000166
Spst4g02224 1223 SUPERFAMILY HAD-like 417 936 IPR036412 -
Spst4g02224 1223 FunFam Phospholipid-transporting ATPase 118 288 - -
Spst4g02224 1223 PRINTS P-type cation-transporting ATPase superfamily signature 881 900 - -
Spst4g02224 1223 PRINTS P-type cation-transporting ATPase superfamily signature 156 170 - -
Spst4g02224 1223 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Spst4g02224 1223 Gene3D - 724 921 IPR023214 -
Spst4g02224 1223 Coils Coil 448 468 - -
Spst4g02224 1223 NCBIfam HAD-IC family P-type ATPase 851 962 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g02224 1223 Pfam Phospholipid-translocating P-type ATPase C-terminal 909 1159 IPR032630 -
Spst4g02224 1223 SFLD p-type atpase 405 932 IPR044492 -
Spst4g02224 1223 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1158 IPR023298 -
Spst4g02224 1223 CDD P-type_ATPase_APLT_Dnf-like 59 1040 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02224 Spst-Chr4 62954296 62960251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02224 1 1216 Primary Pumps ATPases AT1G17500 75.185 0.0 1946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02224 K01530 - gmx:100819559 2305.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00292 5 2551339 2557219 Spst4g02224 4 62954296 62960251 PCT