Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02222 ATGGAATCAACGAAAACTGTGGGCGACTTCGTGAGATCCGATGCTCTCACAGACGAAGGGGAAGCATCTGAAAGGGTAAACGTGGAAAGCTATATTTACTGTTTTGCCCCTTCCTTCCTCATTCCTATAACACTCCCTTTTCCTCTCTATTCGCTTCCCTTTAACTCCACGGTGCAGATCCGAGGAGTTACCCCTTTGCTCTTCTTTCTCTTTCCATATTCCGTTTCCAACCCTTCAAGCTTCCACCAGAGGTTTCTTTTTCCAGTGATGGCAGGTTTGGCTCCAGAAGGAACACAATTTGACGCTCGCCAATATGATGCTAAGATGAGTGAATTGCTTTCCACTGATGGGCAAGAATTCTTCACATCTTATGATGAAGTCTACGACAGCTTTGATGCAATGGGATTACAAGAAAATCTTCTGCGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTTGATGTGATTCAACAGGCTCAGTCTGGAACAGGAAAGACAGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATTGAGAAAGTTATGCGAGCTCTTGGTGATTACCTGGGTGTTAAGGTTCATGCGTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGGGTCCACACTGTTGTTGGCACTCCTGGCCGTGTGTTTGACATGCTGCGGAGGCAGTCTCTCCGCCCAGATTGCATAAGGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGAGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCGCCAGAAGCCCTTGAGATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCTTGGTAAAGCGTGATGAACTGACACTGGAGGGTATCAAACAGTTTTATGTCAATATTGACAAGGAAGAGTGGAAGCTAGAGACATTATGCGACCTTTATGAGACTCTGGCTATCACCCAGAGTGTCATTTTTGTGAATACCAGGCGCAAGGTTGACTGGCTCACTGACAAAATGCGAAGCAATGACCACACGGTCTCTGCCACCCATGGTGACATGGACCAAAACACGCGTGATATCATCATGCGTGAATTCCGGTCCGGCTCTTCTCGAGTTCTCATTACCACTGACCTTCTGGCCCGTGGCATCGATGTGCAACAAGTGTCTCTGGTCATAAACTATGATCTGCCTACCCAGCCTGAAAACTATCTCCATCGCATAGGACGTAGTGGCCGGTTTGGAAGAAAAGGAGTTGCTATAAACTTTGTCACATTGGAGGATTCCAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTGGTTGTAGAGGAGCTTCCATCAAATGTTGCTGATTTGCTCTGA 1509 0.4632 MESTKTVGDFVRSDALTDEGEASERVNVESYIYCFAPSFLIPITLPFPLYSLPFNSTVQIRGVTPLLFFLFPYSVSNPSSFHQRFLFPVMAGLAPEGTQFDARQYDAKMSELLSTDGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDCIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLEDSRMLSDIQKFYNVVVEELPSNVADLL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02222 502 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 126 486 - -
Spst4g02222 502 Pfam DEAD/DEAH box helicase 154 315 IPR011545 GO:0003676|GO:0005524
Spst4g02222 502 FunFam Eukaryotic initiation factor 4A-II 117 336 - -
Spst4g02222 502 Pfam Helicase conserved C-terminal domain 355 463 IPR001650 -
Spst4g02222 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 502 IPR001650 -
Spst4g02222 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 276 284 IPR000629 -
Spst4g02222 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 330 IPR014001 -
Spst4g02222 502 CDD SF2_C_DEAD 342 472 - -
Spst4g02222 502 FunFam Eukaryotic initiation factor 4A-III 337 502 - -
Spst4g02222 502 Gene3D - 338 502 IPR027417 -
Spst4g02222 502 SMART helicmild6 382 463 IPR001650 -
Spst4g02222 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 129 157 IPR014014 GO:0003724
Spst4g02222 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 482 IPR027417 -
Spst4g02222 502 CDD DEADc_EIF4A 133 331 - -
Spst4g02222 502 SMART ultradead3 148 345 IPR014001 -
Spst4g02222 502 Gene3D - 119 337 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02222 Spst-Chr4 62934984 62938832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02222 90 502 Eukaryotic Initiation Factors Gene Family AT1G72730 89.130 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02222 K03257 - gmx:100817948 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02222 4 62934984 62938832 Spst4g02222 4 62934984 62938832 ECH
Spst5g00294 5 2570434 2572867 Spst4g02222 4 62934984 62938832 PCT