Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02220 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAAGATCCCCAATTCGCTCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGTTCCAAAGACAAATCTAGGGTTCCCAAGCTCAAGGCTCTTCCTGCTCCTCCTCCTGCTACCACCTCCACCACCACCACCACCACCACCACCACCACAACTGCCACTCCTCAAAACGCGCATTCTGATGTCGCTGCCCCTGATTCTTCTCAGAATGACCAGGATGTCAAAAACCCTCCAAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCTGACCTAAATGCCATTGTTAGTTTCCTCGAGCAAAAGCATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAATCAAGGAAAACTTGAAAAGGATGCCTCCTCAGGGACAAAATCAACTTCACCAAAGCCAAAAGATGTCTGGCCACCGCAGTCACAACCACAAACACAACGGCAATCCCCACCTTCTGTCTTTACGGCATCTAATGAAACAATAAAGGAAGCTGCTGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCGGAAGCAGTGAAGGAGGCAGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTGCAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTAGCTTAA 849 0.4594 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKSRVPKLKALPAPPPATTSTTTTTTTTTTTATPQNAHSDVAAPDSSQNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVSFLEQKHQVPQNFRRALSTRLRRLVNQGKLEKDASSGTKSTSPKPKDVWPPQSQPQTQRQSPPSVFTASNETIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02220 282 SMART h15plus2 119 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst4g02220 282 MobiDBLite consensus disorder prediction 53 67 - -
Spst4g02220 282 Gene3D - 2 58 - -
Spst4g02220 282 MobiDBLite consensus disorder prediction 81 121 - -
Spst4g02220 282 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Spst4g02220 282 Gene3D - 118 199 IPR036388 -
Spst4g02220 282 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 193 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst4g02220 282 FunFam Telomere repeat-binding factor 1 2 58 - -
Spst4g02220 282 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Spst4g02220 282 SUPERFAMILY "Winged helix" DNA-binding domain 122 188 IPR036390 -
Spst4g02220 282 PANTHER SINGLE MYB HISTONE 4 1 281 IPR044597 GO:0003691
Spst4g02220 282 MobiDBLite consensus disorder prediction 53 122 - -
Spst4g02220 282 MobiDBLite consensus disorder prediction 175 215 - -
Spst4g02220 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Spst4g02220 282 SMART sant 4 59 IPR001005 -
Spst4g02220 282 MobiDBLite consensus disorder prediction 179 215 - -
Spst4g02220 282 CDD H15 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst4g02220 282 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Spst4g02220 282 CDD SANT_TRF 6 56 - -
Spst4g02220 282 Pfam linker histone H1 and H5 family 123 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02220 Spst-Chr4 62926548 62930718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02220 1 282 Single Myb Histone (SMH) Gene Family AT1G72740 47.059 4.06e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst4g02220 Linker_histone 2.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02220 K09422 - gmx:778177 410.994