LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst4g02205	ATGCAAACTCCATCAGCACCCGTTGTAGTCGGCGGAGGCACCACTGTCATCGCAGTCAGCGGCGGTCGGCATAGCAATGGTGCCGTCAAATGGGCTGTGGAGTACCTCCTAAAGAAGAACTCCTCATGCATCCTTATCCATGTTCGAACCAAGTCCGTAAATACCGAAGATGTTAATGATGTACCCAAACATGGTCGTCCACCAACTGACGAAGAATTGCACAATTTCTTTCTTCCCTTCAGAGGCTTTTGTGCCAGAAAAGGGATCACAACAAAGGAATTGGTTTTGCATGACCTTGAAGTTTCAAATGCAATTGTTGATTACGTTGTTGAAAATTGTATTACCACCGTTGTTGTTGGTGCTGCTACTTCTCCCTGGAGTTCTCTTATAAGGAGATTTAATAGAGACGATGTGCCAACTAGTTTAGCAAAATCTCTACCAGATACTTGCTCGTTATATGTTATATCAAAAGGAAAAGCACAACATATTCGACCAACCGGTCATCATGTTCATCATCAGCATATTAAAGCCACACCAACTGGATCCGTGAAAGACACTGTCATTCTCTTGGAAAATGCTCCATTGGTTCATCCACATAAGGATCTCGCTGATATCCAGGTAGCTTGCGAAAATATAAAGAGGCAACCAATCAAAGATGAAATTAGCCGAGAGTCTAGTAAACTTTGGGAATCTTTAAATGAAATAAAAGATGTCATCCTACATAAGTCCAATGAAGATTCCAATTCACCAAGAGGTCCAACTGAATATGCCTCATCACAATGTTCATCAACCAGAAGTTCTCCTGGAAATAGTGACAGCACAGGGCAATCACTTGGTCCTCCTTTGACTCATACGTCAAATGAAAACCACGAAGTAGTTGTAAACTCAAACAAGCCTAAGAACAATGCTGCTTCAAAAGCAGTAAACTTGGAGAAGGAAATGAGGAAATTGAAATTAGAACTGAAGAAAACTACAGAGAAGTATGGTATGGCTTGCAAAGAAGCTGTTTTAGCAACACAAAAGGTAATGGAGCTTGAAAAGTCTTGGCAAGAAAAGGAACGTGATGTAGAAGAAGCAAAACTTGCTGAAGTGACTGCATTGGCTTTGGCCGAGGCAGAGAGGCAAAGAGCCAAACTGGCTGCTGAATCAGCAGAATTGTCAGAACGCCTAGCAAGAAAGGAGACTGAAAAGAGAAGGGAAGCTGAATTAAGGGCCAAGAATGAGCTAGAACAGAGGAATAAAGCATTGCATGAAGTTGTCTGTAATAGTATTCCCTGTAGAAGATATAAAATCGAAGAAATTAAAGTTGGAACAAATAATTTCAACAATGTCTTGAAAATTGGTGAAGGTGGATATGGACCTGTTTTTAAAGGAGTGCTTGATCACACGATTGTTGCCATTAAGGCCGTGAGACCAGATATAGCTCACGCAGAAAAACAATTTCAACAAGAGGTTATTGTCTTAAGCACCATAAGACATCCAAACATGGTGCTTCTCTTAGGAGCATGTCCGGAATTCGGATGTCTTGTTTATGAGTACATGGTAAATGGAAGCTTAGAAGATCGTCTCTTTCGAAAAAACAGCACTCCTCCAATCCCATGGAAAACACGTTTCAAAATAGCGTCTGAGATTGCCACTGGTCTTCTTTTTCTTCATCAGACAAAGCCCGAACCCCTCGTACACCGTGACTTGAAACCAGCAAACATCCTTTTAGACAAGAATTACGTGAGTAAGATTAGTGATGTTGGTTTGGCACGACTTGTTCCTCCTTCAGTGGCTAACAAAACCACACAATATCATTTGACTGGTGCAGCTGGAACATTTTGTTATATTGACCCTGAGTATCAACAAACAGGATTGTTGGGTGTGAAATCAGACGTATATTCATTAGGAGTGGTGTTGCTACAAATCATCACAGGAAAACCTCCAATGGGTTTGTCACACTTAGTTGAGGAGGCTCTTTTGTCAGATACTTTTAGTGAGGTGCTTGACCCTAGTGTTTCAGATTGGCCAATGGAAGAGGCTTCATCATTTGCTAAGTTGGCCTTAAAATGTTGTGAATTGAGAAAACGCGATAGACCAGAACTTGGAAGTGTTGTCTTACCAGAGTTGAATAGAATATCAAGGATATGGGATGATGAGGACACACATTCCCCAAAAAATTATTACATGGTTTGA	2178	0.4105	MQTPSAPVVVGGGTTVIAVSGGRHSNGAVKWAVEYLLKKNSSCILIHVRTKSVNTEDVNDVPKHGRPPTDEELHNFFLPFRGFCARKGITTKELVLHDLEVSNAIVDYVVENCITTVVVGAATSPWSSLIRRFNRDDVPTSLAKSLPDTCSLYVISKGKAQHIRPTGHHVHHQHIKATPTGSVKDTVILLENAPLVHPHKDLADIQVACENIKRQPIKDEISRESSKLWESLNEIKDVILHKSNEDSNSPRGPTEYASSQCSSTRSSPGNSDSTGQSLGPPLTHTSNENHEVVVNSNKPKNNAASKAVNLEKEMRKLKLELKKTTEKYGMACKEAVLATQKVMELEKSWQEKERDVEEAKLAEVTALALAEAERQRAKLAAESAELSERLARKETEKRREAELRAKNELEQRNKALHEVVCNSIPCRRYKIEEIKVGTNNFNNVLKIGEGGYGPVFKGVLDHTIVAIKAVRPDIAHAEKQFQQEVIVLSTIRHPNMVLLLGACPEFGCLVYEYMVNGSLEDRLFRKNSTPPIPWKTRFKIASEIATGLLFLHQTKPEPLVHRDLKPANILLDKNYVSKISDVGLARLVPPSVANKTTQYHLTGAAGTFCYIDPEYQQTGLLGVKSDVYSLGVVLLQIITGKPPMGLSHLVEEALLSDTFSEVLDPSVSDWPMEEASSFAKLALKCCELRKRDRPELGSVVLPELNRISRIWDDEDTHSPKNYYMV	725

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst4g02205	725	ProSiteProfiles	Protein kinase domain profile.	441	704	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst4g02205	725	SMART	serkin_6	441	704	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst4g02205	725	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	413	513	-	-
	Spst4g02205	725	FunFam	Os07g0541700 protein	514	603	-	-
	Spst4g02205	725	Gene3D	Transferase(Phosphotransferase) domain 1	514	721	-	-
	Spst4g02205	725	PANTHER	OS02G0152300 PROTEIN	16	710	-	-
	Spst4g02205	725	CDD	STKc_IRAK	447	707	-	-
	Spst4g02205	725	MobiDBLite	consensus disorder prediction	245	287	-	-
	Spst4g02205	725	SUPERFAMILY	Protein kinase-like (PK-like)	418	700	IPR011009	-
	Spst4g02205	725	CDD	STK_N	14	158	-	-
	Spst4g02205	725	Gene3D	HUPs	14	154	IPR014729	-
	Spst4g02205	725	Coils	Coil	342	419	-	-
	Spst4g02205	725	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	559	571	IPR008271	GO:0004672\|GO:0006468
	Spst4g02205	725	MobiDBLite	consensus disorder prediction	242	287	-	-
	Spst4g02205	725	Coils	Coil	300	327	-	-
	Spst4g02205	725	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	16	124	-	-
	Spst4g02205	725	Pfam	Protein kinase domain	443	696	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst4g02205	725	Gene3D	Phosphorylase Kinase; domain 1	419	513	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst4g02205	Spst-Chr4	62779883	62783239	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst4g02205	13	725	Receptor kinase-like Gene Family	AT1G17540	44.733	0.0	593

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Spst4g02205		Pkinase	5e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst4g02205	-		-	gmx:100799611	1044.65