Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst4g02187 | ATGAAGAACTTGTGTGAGAAAGGCTCTGGTTCTACCCATTTAACATCTCCTTATGCTCTTGGATGCTCATCATGGGGGACTTCGTCTGAATCTGATGTTCAACAATCATCCATGTCCAGAAGTTTGACCTTGAAAATGAGTGTTCTGCCGCAACAGTGCCATAAGAACAAGCCATTGAGTTTTCAATATCAAGACCGAGACTCATCTTCATCTCAATCAACTGGTCAGTCTTATCCGGAAGTTGGTTCAGTGCAATCAGGTCAAATTTCAGTCCAGTGTAGCAATTCATCTGCTTGTTCAACTGTTAACACAACTGGGAGAAAGAATGTGGAAGGTGTCATCAGGTCATCTGTGGGGGGTCAGGATTTTGCCTTCCCTCCTTCACAATTGTGTCACAACCAACCACTTGCTCATACTGCATTCCACATTGCTGAGCCCTGCTTTAGTAGCCTACTAGCTTCCCCATATGGGCCACAACCTAATATTCATCATGCTCAACTGATAGGAATGGCTACTGCTCGAATTCCTCTACCCCTTGATCTAAGTGAGGAGCCTATATTTGTGAATGCAAAGCAGTACCATGCTATACTGAGGCGCAGACAATACCGTGCAAAACTTGAAGCACAGAACAAACTCATCAAAGAACGGAAACCATATCTTCACGAGTCTCGCCATCTGCATGCGTTGAAGAGAGCTAGAGGTTCTGGTGGTCGCTTCTTGAATACCAAAAAGCTTCAAGAGTCGAAACTCACCTCAGCAAACCATGGGCTAGATGTTTCAAGCTGTACTCAGCTGAATCTGAGGGGAAACATGTCAGAATCTAAGGTACATCTAGGGGGAAACTTAAACTACAGAGATGGTGCTTCTACAAACACCTGTTCCGACATTACTAGTGCATCTAATTGTGATGATGTCTTCCATCAACATGAATCAGACTTTAGATTATGTGGTTACCCTTCTCACATTAGAAGAAACATGCAGGGTTACTCTGCCGACATTGGTGGTGGTGGTGGTGGTAGAGGAAATCAACATCGTCTGTCAATCCTTATGTGA | 1053 | 0.4406 | MKNLCEKGSGSTHLTSPYALGCSSWGTSSESDVQQSSMSRSLTLKMSVLPQQCHKNKPLSFQYQDRDSSSSQSTGQSYPEVGSVQSGQISVQCSNSSACSTVNTTGRKNVEGVIRSSVGGQDFAFPPSQLCHNQPLAHTAFHIAEPCFSSLLASPYGPQPNIHHAQLIGMATARIPLPLDLSEEPIFVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHALKRARGSGGRFLNTKKLQESKLTSANHGLDVSSCTQLNLRGNMSESKVHLGGNLNYRDGASTNTCSDITSASNCDDVFHQHESDFRLCGYPSHIRRNMQGYSADIGGGGGGRGNQHRLSILM | 350 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst4g02187 | 350 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 187 | 207 | IPR018362 | GO:0003677|GO:0016602 | |
Spst4g02187 | 350 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 35 | 280 | IPR001289 | GO:0003700|GO:0006355 | |
Spst4g02187 | 350 | ProSiteProfiles | NF-YA/HAP2 family profile. | 182 | 242 | IPR001289 | GO:0003700|GO:0006355 | |
Spst4g02187 | 350 | Gene3D | - | 182 | 243 | - | - | |
Spst4g02187 | 350 | PRINTS | CCAAT-binding transcription factor subunit B signature | 185 | 207 | IPR001289 | GO:0003700|GO:0006355 | |
Spst4g02187 | 350 | PRINTS | CCAAT-binding transcription factor subunit B signature | 216 | 239 | IPR001289 | GO:0003700|GO:0006355 | |
Spst4g02187 | 350 | SMART | cbf3 | 181 | 242 | IPR001289 | GO:0003700|GO:0006355 | |
Spst4g02187 | 350 | MobiDBLite | consensus disorder prediction | 62 | 81 | - | - | |
Spst4g02187 | 350 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 184 | 239 | IPR001289 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst4g02187 | Spst-Chr4 | 62623608 | 62626388 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst4g02187 | 9 | 348 | CCAAT-HAP2 Transcription Factor Family | AT1G17590 | 42.210 | 7.47e-59 | 191 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YA | Spst4g02187 | CBFB_NFYA | 2.8e-26 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst4g02187 | K08064 | - | gmx:100500765 | 567 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst4g02187 | 4 | 62623608 | 62626388 | Spst4g02187 | 4 | 62623608 | 62626388 | ECH | |
Spst5g00306 | 5 | 2622334 | 2624069 | Spst4g02187 | 4 | 62623608 | 62626388 | PCT |