Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02187 ATGAAGAACTTGTGTGAGAAAGGCTCTGGTTCTACCCATTTAACATCTCCTTATGCTCTTGGATGCTCATCATGGGGGACTTCGTCTGAATCTGATGTTCAACAATCATCCATGTCCAGAAGTTTGACCTTGAAAATGAGTGTTCTGCCGCAACAGTGCCATAAGAACAAGCCATTGAGTTTTCAATATCAAGACCGAGACTCATCTTCATCTCAATCAACTGGTCAGTCTTATCCGGAAGTTGGTTCAGTGCAATCAGGTCAAATTTCAGTCCAGTGTAGCAATTCATCTGCTTGTTCAACTGTTAACACAACTGGGAGAAAGAATGTGGAAGGTGTCATCAGGTCATCTGTGGGGGGTCAGGATTTTGCCTTCCCTCCTTCACAATTGTGTCACAACCAACCACTTGCTCATACTGCATTCCACATTGCTGAGCCCTGCTTTAGTAGCCTACTAGCTTCCCCATATGGGCCACAACCTAATATTCATCATGCTCAACTGATAGGAATGGCTACTGCTCGAATTCCTCTACCCCTTGATCTAAGTGAGGAGCCTATATTTGTGAATGCAAAGCAGTACCATGCTATACTGAGGCGCAGACAATACCGTGCAAAACTTGAAGCACAGAACAAACTCATCAAAGAACGGAAACCATATCTTCACGAGTCTCGCCATCTGCATGCGTTGAAGAGAGCTAGAGGTTCTGGTGGTCGCTTCTTGAATACCAAAAAGCTTCAAGAGTCGAAACTCACCTCAGCAAACCATGGGCTAGATGTTTCAAGCTGTACTCAGCTGAATCTGAGGGGAAACATGTCAGAATCTAAGGTACATCTAGGGGGAAACTTAAACTACAGAGATGGTGCTTCTACAAACACCTGTTCCGACATTACTAGTGCATCTAATTGTGATGATGTCTTCCATCAACATGAATCAGACTTTAGATTATGTGGTTACCCTTCTCACATTAGAAGAAACATGCAGGGTTACTCTGCCGACATTGGTGGTGGTGGTGGTGGTAGAGGAAATCAACATCGTCTGTCAATCCTTATGTGA 1053 0.4406 MKNLCEKGSGSTHLTSPYALGCSSWGTSSESDVQQSSMSRSLTLKMSVLPQQCHKNKPLSFQYQDRDSSSSQSTGQSYPEVGSVQSGQISVQCSNSSACSTVNTTGRKNVEGVIRSSVGGQDFAFPPSQLCHNQPLAHTAFHIAEPCFSSLLASPYGPQPNIHHAQLIGMATARIPLPLDLSEEPIFVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHALKRARGSGGRFLNTKKLQESKLTSANHGLDVSSCTQLNLRGNMSESKVHLGGNLNYRDGASTNTCSDITSASNCDDVFHQHESDFRLCGYPSHIRRNMQGYSADIGGGGGGRGNQHRLSILM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02187 350 ProSitePatterns NF-YA/HAP2 subunit signature. 187 207 IPR018362 GO:0003677|GO:0016602
Spst4g02187 350 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 35 280 IPR001289 GO:0003700|GO:0006355
Spst4g02187 350 ProSiteProfiles NF-YA/HAP2 family profile. 182 242 IPR001289 GO:0003700|GO:0006355
Spst4g02187 350 Gene3D - 182 243 - -
Spst4g02187 350 PRINTS CCAAT-binding transcription factor subunit B signature 185 207 IPR001289 GO:0003700|GO:0006355
Spst4g02187 350 PRINTS CCAAT-binding transcription factor subunit B signature 216 239 IPR001289 GO:0003700|GO:0006355
Spst4g02187 350 SMART cbf3 181 242 IPR001289 GO:0003700|GO:0006355
Spst4g02187 350 MobiDBLite consensus disorder prediction 62 81 - -
Spst4g02187 350 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 184 239 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02187 Spst-Chr4 62623608 62626388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02187 9 348 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.210 7.47e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Spst4g02187 CBFB_NFYA 2.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02187 K08064 - gmx:100500765 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02187 4 62623608 62626388 Spst4g02187 4 62623608 62626388 ECH
Spst5g00306 5 2622334 2624069 Spst4g02187 4 62623608 62626388 PCT