Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02178 ATGCTTGGATGGTGCTTTGATACCAATCATATACGATCCCTTCCAACACCAGGCTTATCTTTTGATGACAAGTTCTCTCCTTGCATGAGTTTGGAGTCTCATTCAATCACCTTCCACTACAAGGCTGCAGAAAGCACAAACCAGACTGAATGTGTTATCTGCTTGACAAGTTTTGAACAAGAAGAAAGTATACGGCAGCTTCACACTTGCAACCACATTTTCCACACCTCTTGCATTGACAAGTGGCTTGGCTCTCATTCTGGTTGTCCTCTATGCCGCACTCAGATTGACAAAGTGAATTCCTCAAATAGTATAGTGGCTTTGGAAGAAAATGATCACATGATCATGGTCATTGTGAACTCCTGA 366 0.4235 MLGWCFDTNHIRSLPTPGLSFDDKFSPCMSLESHSITFHYKAAESTNQTECVICLTSFEQEESIRQLHTCNHIFHTSCIDKWLGSHSGCPLCRTQIDKVNSSNSIVALEENDHMIMVIVNS 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02178 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 103 IPR013083 -
Spst4g02178 121 ProSiteProfiles Zinc finger RING-type profile. 51 93 IPR001841 -
Spst4g02178 121 Pfam Ring finger domain 50 93 IPR001841 -
Spst4g02178 121 SUPERFAMILY RING/U-box 40 99 - -
Spst4g02178 121 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 38 103 - -
Spst4g02178 121 SMART ring_2 51 92 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02178 Spst-Chr4 62538557 62538922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02178 35 107 C3H Transcription Factor Family AT5G17600 46.667 2.32e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02178 - - gmx:102661636 233.802