Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02177 ATGCAAGCTGAAGCAGGAGGTGAAGACACGAAGAAAGATCCAGAGTATATTCAATCCAATCCAATGGGATATTCTTATTCTTTCCGAGATTTTGATAAAATCAAGCATGATGTATTTTATTGTCTCTTGCTGGTGAGGGCAAAGATAGACAATAATAATTCTTCATATCCAGTGACAAATTTTGTTTATCCCAATGACCCCCCTCATAAAGTACGACGTGTTTGTGAGCTTCAAATTGATGCGTTTGTGGATAACAAGCTTGTGAAAGGAGATGGACTACCTGAAGCACTTGTTCAAGCAATTGAAGGATCATTAATTTCATTGAAAAAGGATGGACAGATTGTACTACCAGTCTTCTACAAAGTGGATCCTTCACATGTGCGATGTCAGAAGGGGACTTATGAAGATGCATTCGCTAAACATGAAATAAAATATAGTTTGACCACCATGCAAACCTGGAGATCTGCTTTGACAGAGTCTGCAAATCTATCAGGATTTCATTCATCAACTTTTCGGGACGAAGCTGAGCTTATTAAAGAGATAGTTAAATACCATGATTACTCGGTGGTTGCCGGATTAGAAAGGTTGAAGAATAAATCTCTTATAAGTGTTTCTCAAGAAAATGGTGTATCCATGCACAACATTATACAAGAAACAGCTTGGCAGATTGCTCGCGAAGAATCATTTGAAGATCCTAGGAGCCATATTCGACTATTGGATCCTGAGGACATTTATCTAGTACTGAAATACAACAAGGGTGGCGAGGCTATCAGAAGCATAGCGATTAACTTGTCAAGAATCAAACAACTAGAATTAAATCCTCAGCCGACTGAAAAAGCTTTGGCAAAAAGAACCGGTTGGGGCTTACTAGAGTGCATTCATCAATTTTCTCTTGAAAATCTTGAGAAATTGGATCTACGTGGTTGCCTTTCCCTTAGAAGCCTTCGAAGCAGTGTCCATCTGGACTCCCTTCGTTATCTCTCCCTCTATGGATGCATGGCACTAAAGGATTTCTCAGTGACCTCAAAGAACATGGTAAAGTTGAATTTAGAGCTCACTCGTATCAAGCAACTACCTTCATCTTTTAGACTTCAAACCAAGCTTCAAAAGCTAAGGCATACAGTTACATTGACAACTTGCCAACAAGTTTCAAGCATCTCACAAGGCTGCGACATCTAG 1179 0.3944 MQAEAGGEDTKKDPEYIQSNPMGYSYSFRDFDKIKHDVFYCLLLVRAKIDNNNSSYPVTNFVYPNDPPHKVRRVCELQIDAFVDNKLVKGDGLPEALVQAIEGSLISLKKDGQIVLPVFYKVDPSHVRCQKGTYEDAFAKHEIKYSLTTMQTWRSALTESANLSGFHSSTFRDEAELIKEIVKYHDYSVVAGLERLKNKSLISVSQENGVSMHNIIQETAWQIAREESFEDPRSHIRLLDPEDIYLVLKYNKGGEAIRSIAINLSRIKQLELNPQPTEKALAKRTGWGLLECIHQFSLENLEKLDLRGCLSLRSLRSSVHLDSLRYLSLYGCMALKDFSVTSKNMVKLNLELTRIKQLPSSFRLQTKLQKLRHTVTLTTCQQVSSISQGCDI 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02177 392 Gene3D - 105 189 IPR035897 -
Spst4g02177 392 Pfam TIR domain 109 184 IPR000157 GO:0007165
Spst4g02177 392 SUPERFAMILY L domain-like 290 371 - -
Spst4g02177 392 Gene3D Ribonuclease Inhibitor 190 389 IPR032675 -
Spst4g02177 392 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 87 183 IPR044974 GO:0006952
Spst4g02177 392 SUPERFAMILY Toll/Interleukin receptor TIR domain 78 166 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02177 Spst-Chr4 62524164 62532289 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02177 304 379 WRKY Transcription Factor Family AT4G12020 38.272 9.34e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02177 - - gmx:100802823 197.593