Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02170 ATGGGAAGACGACCCTGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCCCGAGAAGAAGACGAAACCCTTTCCAAATATGTTGTCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGTGGAAAAAGCTGCAGACAAAGGTGGTTGAACTATCTCAAGCCCGGTATAAAAAGAGGTGACATCTCTGTGGATGAAGAGGATATGATAATCAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTACTGGAACACTAATCTGTCAAAGAAGCTACAGAAACACCCTACATCATCATCTGTTTCTTCACTTCAAAACAAACGTAACGAAGAAGAGAAGAGCAAACAAGTGCATGTAGCACCCGAAGCGCCACGTCCTAGGAGAGTTAATGCAGTTGAATACAGTAAAATTATGGAGAATGGTGGGTGTGCTGGCAATACCAGTCCCTCAAATAAAGTAGAGGGTAGTAGTGATGAAGCTTCTTTTAGTGATTTCCTCATCGACATTGATCAAAACCAGTTGTTGATTGCTGATGATTCCAACTCAAAGGTCCCACAAATGGAGGAAGACCACAACAACAAACAGGTAGGCTTAACCAACAGTCCTAGCTCATCATCACCTTCTGATCATTGTCACCATCTCTTGCCAGAGAAATTTGACCCTCTGGAGACCCTTTTGGATGTGGAGCTAAAGAGGATGGCTTCCTTTCTTGGACTTGAAAATGATTGA 798 0.4323 MGRRPCCPKEINKGAWSREEDETLSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKHPTSSSVSSLQNKRNEEEKSKQVHVAPEAPRPRRVNAVEYSKIMENGGCAGNTSPSNKVEGSSDEASFSDFLIDIDQNQLLIADDSNSKVPQMEEDHNNKQVGLTNSPSSSSPSDHCHHLLPEKFDPLETLLDVELKRMASFLGLEND 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02170 265 CDD SANT 70 111 IPR001005 -
Spst4g02170 265 MobiDBLite consensus disorder prediction 114 128 - -
Spst4g02170 265 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Spst4g02170 265 FunFam Transcription factor TT2 69 140 - -
Spst4g02170 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Spst4g02170 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Spst4g02170 265 MobiDBLite consensus disorder prediction 206 233 - -
Spst4g02170 265 CDD SANT 15 60 IPR001005 -
Spst4g02170 265 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Spst4g02170 265 MobiDBLite consensus disorder prediction 129 145 - -
Spst4g02170 265 FunFam MYB-related transcription factor 12 65 - -
Spst4g02170 265 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Spst4g02170 265 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Spst4g02170 265 MobiDBLite consensus disorder prediction 215 233 - -
Spst4g02170 265 Gene3D - 70 142 - -
Spst4g02170 265 Gene3D - 7 66 - -
Spst4g02170 265 MobiDBLite consensus disorder prediction 114 151 - -
Spst4g02170 265 SMART sant 12 62 IPR001005 -
Spst4g02170 265 SMART sant 65 113 IPR001005 -
Spst4g02170 265 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 204 - -
Spst4g02170 265 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02170 Spst-Chr4 62449030 62450416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02170 1 196 MYB Transcription Factor Family AT4G09460 47.980 1.02e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g02170 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02170 K09422 - gmx:547568 454.907