Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02169 ATGGGAAAAGCAGAATTTCTCTGTCACCTTGTTCTTCGATCTCTGACATATCTCTGTGCTGTCTCTCATTCTATAACAGAAACCTTTGCTGCTATGCGTTACTGGGATGACTTCAACCTTAGCAGAGAAGTGATTACTCATTCTCTGCCAGCACACACCATCTTTCTCACTCTCTTCATCAACACTTACTTGCACGTGCCCAAAGACATGGGAAGAAGCCCTTGTTGTTCTAAAGAAGGCTTGAACAAAGGAGCTTGGACTGCTCTCGAAGATAAAATTCTGACAGAATACATTAACATTCATGGCGAAGGAAAATGGAGACACATGCCCAAAAGAGCAGGTCTTAAGAGATGCGGGAAAAGTTGCAGGCTGAGATGGTTGAATTATCTCAGACCTGGCATTAAGAGAGGCAACATTACTAATGATGAAGAGGAGCTTATTATCAGGCTTCACAATCTTCTTGGAAACAGGTGGTCCTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAACATTGGAAGGAAACTTCAAAATGGCACCCCGGGATACTCCATTACAAGTGGAGGTGCACGAAGCAGTTTAAACACAGTTCAGCATGATCAAAACGTGAAGAACCAAGAATGGCACTATGATAAGGGTTCGTGTCTTGTTCAGACTAAAGCAACAAGATGGAGCAAGGTCACAGTGACCAATGAAATTAGTCAACATAGTGAAGTCAAAAAGAGCAATGTTGGTGATCATAACAAAATGAAGGCATTTCTAGTGTCTCCATCTTCAGAGAGTAACAATGATTCAGTGCTGAATTTCATGGAAGATCTTGAGATGGATGGAAATTTCTTCTCGGAGTTACTGAAGATGGATTTGCCTGAATCATCTTGTCAGGGAAATAAGATACTGGAAGACAATGATAACCCTAGTTCGGTTGATAAAGGGTATTTATCTCCAAAATCAGGCAGTGAGACCACCCACTTTCCTTGGGGTGATTCACTGTATGACCCAAATTTTGATTTTCTACCAGTGACAACTTTTATGGAATCCGGATTTGATTGGCTATGA 1083 0.4146 MGKAEFLCHLVLRSLTYLCAVSHSITETFAAMRYWDDFNLSREVITHSLPAHTIFLTLFINTYLHVPKDMGRSPCCSKEGLNKGAWTALEDKILTEYINIHGEGKWRHMPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGTPGYSITSGGARSSLNTVQHDQNVKNQEWHYDKGSCLVQTKATRWSKVTVTNEISQHSEVKKSNVGDHNKMKAFLVSPSSESNNDSVLNFMEDLEMDGNFFSELLKMDLPESSCQGNKILEDNDNPSSVDKGYLSPKSGSETTHFPWGDSLYDPNFDFLPVTTFMESGFDWL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02169 360 Gene3D - 139 218 - -
Spst4g02169 360 CDD SANT 85 130 IPR001005 -
Spst4g02169 360 ProSiteProfiles Myb-like domain profile. 131 181 IPR001005 -
Spst4g02169 360 ProSiteProfiles Myb-like domain profile. 78 130 IPR001005 -
Spst4g02169 360 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 70 265 - -
Spst4g02169 360 MobiDBLite consensus disorder prediction 304 328 - -
Spst4g02169 360 SUPERFAMILY Homeodomain-like 81 177 IPR009057 -
Spst4g02169 360 Gene3D - 76 136 - -
Spst4g02169 360 CDD SANT 140 181 IPR001005 -
Spst4g02169 360 MobiDBLite consensus disorder prediction 303 328 - -
Spst4g02169 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 185 IPR017930 -
Spst4g02169 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 130 IPR017930 -
Spst4g02169 360 SMART sant 82 132 IPR001005 -
Spst4g02169 360 SMART sant 135 183 IPR001005 -
Spst4g02169 360 FunFam MYB-related transcription factor 82 135 - -
Spst4g02169 360 Pfam Myb-like DNA-binding domain 136 179 IPR001005 -
Spst4g02169 360 Pfam Myb-like DNA-binding domain 83 130 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02169 Spst-Chr4 62421532 62427107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02169 70 185 MYB Transcription Factor Family AT2G16720 75.000 8.83e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g02169 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02169 K09422 - gmx:100809225 501.516