Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02154 ATGATCATGGAACCAAATCCAACACCAGATCATAGTCTGGACTGGTTTGAAGGTTCTGTTTCTTTCTTTCCACTTCCACCATTCTTTGATGATCCATATAACTCTAGTGACATTCAAGAGTATCAGCTGTGGGGTCAAGACATAAACAGCCAGTATCAAACTGATGCTCATACCAGTTCCCCTAGTGCCACCAACATTGCTACTAGCATAGCACCCCCTGAGACTTGTGGTTCTGACAACCTTCCACTCTCTGATTTGCCCAAGAAAAGAAGTGCCACTGATGAGTCAAGTCTCAGACCACCACAAAACCACAAGCACAAGAAAATCAAGAGCAAACCAATGATTAATGAAACAGATAAAGGAGATGCACGAGGGACAACAGTTAGAAAACCTGGTGGGAACAAGAAAGGTGCTGCTAAAGGTGTAGGAAATAATTGCAACAACAAGGAAGGTAGGTGGGCTGAACAGTTGCTCAATCCTTGTGCTGCAGCCATAATTGGTGGAAACCGAAACCGTGTGCAACACCTCTTGTATGTTCTCCATGAGTTAGCATCACCTACTGGTGATGCTAACCACAGGCTTGCAGCACATGGTCTTAAAGCACTCACACACCACTTATCATCTTCTCCAGCATCTACCTCTTCAGAATCCATAACTTTTGCATCTACCGAGCCACGGTTCTTCCAAAAGACACTACTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCTTTTCCTAGCAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGGGGAAGACAATGAGAATTCACGCACCCTTCACATCCTTGACATTGGAGCCTCTCATGGCATGCAATGGCCAACTTTTCTAGAGGCCTTGAGTCGCAGACCTGGTGGACCTCCTCCACTTGTTCGCCTCACTGTGGTCACTGCTTCTTCCACTGAAAATGACACCCCATTTTCTATTGGTCCTCCTGGTGATAACTTCACATCTAGACTCCTTATTTTTGCTAAGTCAATGCACATTAATTTGCAGATTGAAAGGCTAGATAATTGTCCATTACATACGCTGAGTGCTCAAAGCGTTAACACCTCCCCGGATGAAATCTTTGTTGTGTGTGCACAGTTTAGGCTGCATCAGTTAAGTCACAATACCACTGATGAAAGGAGTGGGTTTCTGAAAGTGCTGAGGAACATGGAGCCCAAAGCGGTGATACTAAGTGACAACAACATGGATTGTTGTTGCAATTGTTGTGGGGATTTTGCCACCGGGTTCTCTAGAAGGGTGGAGTACTTGTGGAGGTTTTTGGACTCAACAAGCTCAGCGTTCAAGGGTCGTGAGAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCGGCAAAAGCATTGACAAACCAGCGAGAGATGAATGAAGGGAAGGAAAAATGGTGTGAGAGAATGAAAGAAGCAGGGTTTGTGGGAGAAGTGTTTGGAGAGGATGCAATAGATGGAGGTAGAGCTTTGCTGAGAAAGTATGATAGTAATTGGGAGATGAAAGTTGAAGATGAAAATAGAAGTGTTGGACTATGGTGGAAAGGGCAACCTGTTTCTTTCTGTTCCTTCTGGAAGCTGGACGGGAATGATCATAGCTCAACATTCACATCATGA 1626 0.4465 MIMEPNPTPDHSLDWFEGSVSFFPLPPFFDDPYNSSDIQEYQLWGQDINSQYQTDAHTSSPSATNIATSIAPPETCGSDNLPLSDLPKKRSATDESSLRPPQNHKHKKIKSKPMINETDKGDARGTTVRKPGGNKKGAAKGVGNNCNNKEGRWAEQLLNPCAAAIIGGNRNRVQHLLYVLHELASPTGDANHRLAAHGLKALTHHLSSSPASTSSESITFASTEPRFFQKTLLKFYEVSPWFSFPSNIANASILQVLGEDNENSRTLHILDIGASHGMQWPTFLEALSRRPGGPPPLVRLTVVTASSTENDTPFSIGPPGDNFTSRLLIFAKSMHINLQIERLDNCPLHTLSAQSVNTSPDEIFVVCAQFRLHQLSHNTTDERSGFLKVLRNMEPKAVILSDNNMDCCCNCCGDFATGFSRRVEYLWRFLDSTSSAFKGRESDERRVMEGEAAKALTNQREMNEGKEKWCERMKEAGFVGEVFGEDAIDGGRALLRKYDSNWEMKVEDENRSVGLWWKGQPVSFCSFWKLDGNDHSSTFTS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02154 541 MobiDBLite consensus disorder prediction 52 75 - -
Spst4g02154 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 138 517 IPR005202 -
Spst4g02154 541 MobiDBLite consensus disorder prediction 52 146 - -
Spst4g02154 541 Pfam GRAS domain family 155 529 IPR005202 -
Spst4g02154 541 ProSiteProfiles GRAS family profile. 145 529 IPR005202 -
Spst4g02154 541 MobiDBLite consensus disorder prediction 112 126 - -
Spst4g02154 541 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02154 Spst-Chr4 62306090 62307715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02154 1 529 GRAS Transcription Factor Family AT3G13840 50.187 6.54e-169 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst4g02154 GRAS 4.2e-73 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02154 - - vun:114166202 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02154 4 62306090 62307715 Spst4g02154 4 62306090 62307715 ECH
Spst4g02154 4 62306090 62307715 Spst5g00328 5 2747691 2749037 PCT