Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02130 ATGTCAACTTTCCCCAACACCGTGTCGGAAGGCCGGAGGTTTGGCAAGGCACCGGAAAAATCCTCTTTTTCTCAGACTTGCACTCTCTTGAGCCAGTTCTTGAAGGAGAAACGAGCTTCTGGAGATTCCACCCTTGGCATGGGTGGGAAAATGGAACCTAAAGCGAGTACAAAGGATATGTTAGGCAGCCTGCAAAACTCAGATGGGGCTTTGAAACTAAGCGCTTCTGCCATGGATTTTCTTCCCCAGCTTGTGGAAAACCCCTGCATTAAGAAGTCTAATCTTAGATCATCGGTTCCTGAATCTCCTCAAATGACAATATTCTATGCTGGAAAAATGTTGGTATTTGATGCTTTTCCTCCGGAGAAGGCAACTGAGGTTATGGAGTTGGCCACCAAACTGGCATCAGACACTTCCGGTGCCGCCGAAGAAACTCCCCCTAATGATCCGGTTACTACTGAAAAATTGGCTGTGGCCGAAGTGCCTCAAACAATTACTTCAGAAACCCCTAAGCCAGGAAGCCAAGGGGTTGGTTCAGATATGAGGTATCCAAGAAGAGCTTCACTTCTAAAATTTCTCGAGAAAAGAAAAGAAAGGGTTAATGCCAGAGGGCCTTACCAAATGAACAATCACAAACCAGAAGGAAGCAGTTCGGGGGTTGAACCTGAAGATCAGTGTTCTAAACAGTTTGACCTTAACTTGTAG 705 0.4596 MSTFPNTVSEGRRFGKAPEKSSFSQTCTLLSQFLKEKRASGDSTLGMGGKMEPKASTKDMLGSLQNSDGALKLSASAMDFLPQLVENPCIKKSNLRSSVPESPQMTIFYAGKMLVFDAFPPEKATEVMELATKLASDTSGAAEETPPNDPVTTEKLAVAEVPQTITSETPKPGSQGVGSDMRYPRRASLLKFLEKRKERVNARGPYQMNNHKPEGSSSGVEPEDQCSKQFDLNL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02130 234 MobiDBLite consensus disorder prediction 198 234 - -
Spst4g02130 234 MobiDBLite consensus disorder prediction 160 174 - -
Spst4g02130 234 MobiDBLite consensus disorder prediction 1 20 - -
Spst4g02130 234 Pfam Jas motif 185 207 IPR018467 -
Spst4g02130 234 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Spst4g02130 234 SMART tify_2 98 133 IPR010399 -
Spst4g02130 234 Pfam tify domain 100 131 IPR010399 -
Spst4g02130 234 MobiDBLite consensus disorder prediction 210 234 - -
Spst4g02130 234 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 15 217 IPR040390 -
Spst4g02130 234 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02130 Spst-Chr4 62065664 62067719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02130 12 208 Tify Gene Family AT1G19180 36.564 1.01e-24 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Spst4g02130 tify 4.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02130 K13464 - gmx:100778559 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02130 4 62065664 62067719 Spst4g02130 4 62065664 62067719 ECH