Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02121 ATGGCGACCAAAGATTCTCCTATGGAGCTGCACGAAATCACCTCCGAATCGGAAGAATCCGATCCGGTTTACGACTGGGAAGATTCGGGAGAAGACCCCGATTACGACGTGCTCGAAGAAACTCATACCAAATTCTCAAACCTCTCAGTTAAGCACAAGGCAAAAGCGCGCGTTGTCGAAGCGACGGTTCGAGGTGAGGAAGTGGTGGAGATCACTGCATCTGTAAATGATGGAGAGAATTTTGGAAAAGTTCAAAAGTTAATCGAAGAGGGATTGCTGACGAAATTGAAAGTGGATGAATGCAAGTTGTATTTGAGGAAGAATGGTCTGAGGCTAACTGGAAACAAGGACACACTTATACAACGCATAAGGGAGCACTTAGACATTTTAAATGGAGGGGAGAAGAAGTATCCGCCTTCTAGCTTTGTGTTGAATTGCAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAACATCGCATCCAGGAGTGCCAGTGGTCCACCTTGTGGTAAAAGAATTGTTGCAGGCCGCATAGTGAAAGAAAGTTATGGTACCGCTAAACAACAGCATACATTTACGATTGAAGTACTCTGGAGTAAAGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTATAGGCTGAAGACTTTTAGACAGAAATGGGAGGATGAAGCAAAGAGGCAGAGAATATTGATGGAAAAACACTCAAGGGGATCTCTTGCTAGGGCAGATAGAGAAGCAAGGATACAAGAAAAGGAGAAGCGGAAAAATACCAAGGAAAACAGGGTCTCCATAAAGGAAGGAAGGAACCAATGTCAATCAAATTCACAGGTTACTAGGTCACAATATCAATCTCAAGGAACAAATAAACTCAATAATCCAGAAAAACCAGAATTTCCATCTCGAAGTTCAGGTTTATCTGCCAATGTAATGAACGGAACATCCTCTATTGTAAATAATCCAGCAGCTCCGGTATTTGACCAATTGCCAATATTAGGAAGAACATTATTTGCTGTTCACAATATGCATAATCAGCAAGCTTGGAATCGCACAGGTCACTTCAATACTTTTGATATTGGTCATGTGAGGGGATCTGATCTTGGTGCAAACTATAATTATGCAGACCCCCATTTCAGAGAAAACCTGAAATACCACTCTAACATGGCTGAGAAGACAACTGGATTTACAATGGGAACTCATCATAGGATACCTTTGGCAAATGCAAACCACCCTCACCCATTGATGGCCCCCAACAGAGAAAACCATAAGCCCAATCAGGTGTGTAGACATTACTCCCTTGGTAGGTGCTATTTTGGCGACAACTGCAAATTCTTACATGATTTTAGACCAAGGGAATAA 1407 0.4236 MATKDSPMELHEITSESEESDPVYDWEDSGEDPDYDVLEETHTKFSNLSVKHKAKARVVEATVRGEEVVEITASVNDGENFGKVQKLIEEGLLTKLKVDECKLYLRKNGLRLTGNKDTLIQRIREHLDILNGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGKRIVAGRIVKESYGTAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTFRQKWEDEAKRQRILMEKHSRGSLARADREARIQEKEKRKNTKENRVSIKEGRNQCQSNSQVTRSQYQSQGTNKLNNPEKPEFPSRSSGLSANVMNGTSSIVNNPAAPVFDQLPILGRTLFAVHNMHNQQAWNRTGHFNTFDIGHVRGSDLGANYNYADPHFRENLKYHSNMAEKTTGFTMGTHHRIPLANANHPHPLMAPNRENHKPNQVCRHYSLGRCYFGDNCKFLHDFRPRE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02121 468 PANTHER SAP DOMAIN-CONTAINING PROTEIN 14 464 - -
Spst4g02121 468 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Spst4g02121 468 ProSiteProfiles Zinc finger C3H1-type profile. 439 465 IPR000571 GO:0046872
Spst4g02121 468 Pfam CCCH-type zinc finger 443 463 IPR041367 -
Spst4g02121 468 Gene3D - 431 468 - -
Spst4g02121 468 SMART c3hfinal6 439 464 IPR000571 GO:0046872
Spst4g02121 468 Gene3D SAP domain 81 139 IPR036361 -
Spst4g02121 468 MobiDBLite consensus disorder prediction 19 33 - -
Spst4g02121 468 MobiDBLite consensus disorder prediction 1 33 - -
Spst4g02121 468 SMART sap_9 93 127 IPR003034 -
Spst4g02121 468 MobiDBLite consensus disorder prediction 283 321 - -
Spst4g02121 468 MobiDBLite consensus disorder prediction 248 321 - -
Spst4g02121 468 MobiDBLite consensus disorder prediction 248 282 - -
Spst4g02121 468 SUPERFAMILY CCCH zinc finger 438 463 IPR036855 GO:0046872
Spst4g02121 468 SUPERFAMILY SAP domain 83 128 IPR036361 -
Spst4g02121 468 Pfam SAP domain 93 127 IPR003034 -
Spst4g02121 468 Coils Coil 256 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02121 Spst-Chr4 61991741 61994682 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst4g02121 SAP 1.2e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02121 - - gmx:100815642 647.506