Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02118 ATGGCTGATTCTTTCTCCTTTGAGGCTGACTCTTTCTCAAGCCGCCAGACACGGCACTATCCAACACCGGTGAGTTATCGCAGTGTGTCTGGCTCTGGCTCTTTCATACCATCCAGCTCTCATAGCAATTCCACTTCCACAACCAGAAGAGCTCGCCGCAACCGAGTTCCTGCCACACCCTTTGCTTCAGATGATGACCATTCATGGCAAGAAGAGGTTTCATGGAAGTTTGAGGCCACCGGGTGGCGCGATTACAGCACAAACTTTGGTTCTGTTCTCACTCCATGGCCAGCTAGCTCCCCATCTGATCACAGCCGAATATTTCGTCGATCAGCCAACGACTACTACCTTTCAAGAACAAGTAGGTTCAGTGGTCTCGCAACCTCTTCTTATGAACATTCTGGCTATGGTAGAGTTGAACTTAAGAGCTATGTTGCAAGGCACAATGATCATAGTTACTTTGATCAGCGTAGTCAGCTTCATGCATTATCCAAACCGGGGTTCATCCAAGAGAAGAGTAGTAGAAAAGGTAGTCCATTGGCTGAGGAAGATGAGCTTAGTATGATAGATTACAGCATAACAGAAGAGCATGTGATTTCACCTAATGGCAATGGTCATGGTCTTGAATCCCCATATTTTAAACATGGCGATGGTGATTATGGTGGGAGTTGTTATGTTGGTCATGGCCTACCATCACATGATGGTAGCCATCTTTATGGAGGTGGTGGGGGTTATACTTATAGTCACCATGGCATTGAGAAGTATTCAGGATATGATGAAGAAGGTGAGGAGGATATGGATGAGGAAGATGCAAGGCCTCCAAAGGCTGTTGGGCTGTTCAGTTTGTTTAGGTACTCAACTAAGTGGGATTGGATGCTTGTGTTTGTGGGGTGTTTAGGGGCCCTCATAAATGGAGGATCACTTCCTTGGTACTCTTATCTTTTTGGAGACTTAGTCAATAAGATTTCAGAAGCAGACAAGGACAAAAAACAGATGATGAAGGATGTAGAGAAGATATGCATATTTATGACTGGGCTAGCTGCTGTTGTGGTAGTTGGAGCATATTTGCAGATAGCATGTTGGAGATTAGTGGGGGAGCGATCTGCACAAAGAATTAGAAGTGAGTATCTTAGAGCAGTTCTTAGACAGGACATTACTTTCTTTGATACAGATATCAACACCGGTGATATTATGCATGGAATTGCAAGCGATGTTGCACAGATTCAAGAAGTTATGGGAGAGAAGATGGCTCACTTCATTCATCATATATTTACATTCATATGTGGATACGCAGTTGGGTTTAAAAGATCATGGAAAGTTTCTCTTGTGGTTTTCTCAGTCACTCCATTGACAATGTTCTGTGGCATGGCATACAAAGCACTTTATGGTGGCCTAACAGCAAAAGAGGAAGCTTCTTATAGGAAAGCTGGTAGCATTGCGGAGCAGGCCGTAAGTTCAATTAGGACAGTGTTTTCATTTGTTGCAGAAAACCAATTAGCTGGGAAATATGCTGAACTACTGCAGCAATCAGCTCCAATAGGGGCAAAAGTTGGTTTTGCTAAAGGCATAGGCATGGGTGTGATTTACTTAATAACCTATTCAACATGGGCACTGGCTTTCTGGTATGGCTCCATATTAATTGCCAAGAATGAACTTGATGGAGGTTCAGCCATTGCTTGTTTCTTTGGTGTCAATGTTGGGGGAAGAGGATTGGCACTGGCACTTTCATATTTTGCACAATTTGCACAAGGGACTGTTGCAGCAAGCCGTGTATTCTACATTATAGAGAGAATCCCTGAGATTGATCCCTATAGCCCTGAGGGTAGGAAGCTTTCTGGTGTTCGTGGAAGGATCGAGTTAAAAAGTGTTAGTTTTGCATATCCATCTCGTCCTGATTCTCTGATACTTCATTCTCTTAATTTGATATTACCATCTTCAAAAACTGTGGCATTAGTTGGTGCCAGTGGTGGGGGAAAGTCCACCATCTTTGCTCTCATAGAGAGGTTTTATGACCCTACTGAAGGGATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAGTGGCTACGTGATCAGATTGGGATGGTTGGTCAGGAACCAATTCTCTTTGCCACATCTATACTGGAAAACGTGATGATGGGAAAAAATAATGCCACAAAAGAAGAGGCAATTTCTGCTTGCATTGCTGCTGATGCTCACAGCTTCATCACTAGCCTACCACTAAGCTATGACACTCAGGTGGGAGATAGGGGTACAAAACTCTCCGGAGGTCAAAAACAGAGAATTGCATTGGCTCGAGCAATGATCAAAGATCCTAAAATCCTTCTTCTAGATGAACCTACTAGTGCTCTTGATGCCGAGTCAGAGTCTGCAGTCCAACGGGCAATTGACAAGATTTCTGCAGGCCGAACAACCATTGTGATTGCTCACAGGATAGCAACAGTGAAGAATGCTCATACCATTGTGGTTCTTCAACATGGTTCTGTCACTGAGATTGGTGACCATCGGCAGCTTATGGCAAAAGCAGGAGCATACCACAACCTTGTCAAGCTTGCTACCGAAGCCATTTCAAGACCTCTAGCTATAGAGAATGGCATACAAAAAGCCAATGATTTATCCATCTATGATAAATCTGTTGCTGCTTTATCAGGATCAAGATATGTAGTTGATATCCCTAGGCCTAAAGACTTAATATCTATGCATGAGGAGGAGAAACAAGAGGACATGGAAGATGATGAGCAAGACAAGAAGGCAAAAAAATACATACTTTCTGAAATATGGAAGCTGCAAAAGCCTGAGTTTGTGATGCTATTTTCAGGACTTATTCTGGGAATGTTTGCTGGTGCTATTCTGTCCCTTTTCCCATTGGTTTTAGGCATATCCTTGGGTGTATATTTTGGCCATGACACTTCTAAGATGAAAAGAGAAGTTGCCCACCTTTGTTTAACACTTGTTGGCCTTGGATTTGGTTGCATACTTTCCATGACAGGACAACAAGGTTTGTGTGGTTGGGCCGGATCAAAGCTGACACAAAGGGTTAGAGACATCTTGTTTCAATCCATACTGAAACAAGAACCTGGGTGGTTTGACTTTGAAGAAAACTCTACGGGAGTGTTGGTATCAAGGCTCTCATTAGACTGTGTTAGTTTTCGATCAGTACTTGGTGATAGATTTTCAGTCCTTCTTATGGGGTTGAGTTCAGCTGCTGTTGGCCTCGGTGTGTCCTTTGCCTTCAATTGGAGACTAACGCTTGTGGCAGCTGCTGTAACTCCTTTTGCACTTGGTGCAAGCTACATAAGCTTGATCATAAACATTGGGCCGCGAGTGGACAACGACTCTTATGGCAAAGCTAGTAACATTGCTTCTGGTGCTGTGTCAAACATAAGAACAGTTACCACATTTTCTGCCCAGGAGCAGATAGTTAAGTCCTTTGATAGAGCCCTGTCAGAACCTGCAAGAAAATCATTACGAAGTTCACAACTTCAAGGTCTTATGTTTGGGTTTTTTCAAGGTTCCATGTACGGAGCATACACCTTAACACTTTGGTTTGGTGCATACCTTGTAGAACATCACAAGGCAAAACTTGGAGACGTGTTTAAGATCTTTCTCATTCTTGTTCTGAGCTCATTTTCTGTGGGACAACTAGCTGGTTTAGCACCAGATACTTCTATGGCGAATACAGCAATTCCTGCAGTTCAAGATATCATAAAACGTAGGCCACTGATTGACAATCATAGAGCAAAAGGTAGGAAAGTAGACAGATCAAAGCCGTTCAACATAGAATTCAAGATGGTGACATTTGCATACCCATCTAGGCCAGAAGTGACTGTGTTGAGGGACTTTTGTTTAAAGGTCAAAGGTGGAAGCACAGTGGCCTTGGTGGGACCAAGTGGATCAGGAAAGTCAACGGTCATATGGTTGATTCAGAGGTTCTATGATCCTGATCAAGGAAAGGTGATGATGAGTGGGATAGATTTGAGGGAGATTGATGTGAAGTGGTTGAGGAGGCAAGTGGCTTTGGTGGGTCAAGAACCTGCACTGTTTGCTGGAAGCATAAGGGACAATATTGCATTTGGGGACCCAAATGCTTCATGGACTGAAATTGAAGAGGCTGCAAAGGAGGCTTACATCCACAAGTTCATCAGTGGCCTTCCTCAGGGTTACGAGACACAGGTTGGTGAAAGTGGGGTCCAGTTATCAGGTGGCCAGAAACAAAGAATTGCTATAGCAAGGGCCATATTGAAAAAATCAAGGGTACTTTTGCTTGATGAAGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAGCACATCCAAGAAGCCCTTAAAAATGTTGCTAAAGAGGCAACAACCATAATAGTTGCTCACCGTCTTTCCACAATCAGAGAAGCTGATAAGATCGCAGTTATGAGAGATGGGGAAGTGGTGGAGTATGGGAGCCATGACACTCTCATGGCTTCAACTCAAAATGGCTTGTATGCTAGCCTAGTTCGAGCTGAGACTGAAGCCAATGCCTTTTCTTGA 4530 0.4351 MADSFSFEADSFSSRQTRHYPTPVSYRSVSGSGSFIPSSSHSNSTSTTRRARRNRVPATPFASDDDHSWQEEVSWKFEATGWRDYSTNFGSVLTPWPASSPSDHSRIFRRSANDYYLSRTSRFSGLATSSYEHSGYGRVELKSYVARHNDHSYFDQRSQLHALSKPGFIQEKSSRKGSPLAEEDELSMIDYSITEEHVISPNGNGHGLESPYFKHGDGDYGGSCYVGHGLPSHDGSHLYGGGGGYTYSHHGIEKYSGYDEEGEEDMDEEDARPPKAVGLFSLFRYSTKWDWMLVFVGCLGALINGGSLPWYSYLFGDLVNKISEADKDKKQMMKDVEKICIFMTGLAAVVVVGAYLQIACWRLVGERSAQRIRSEYLRAVLRQDITFFDTDINTGDIMHGIASDVAQIQEVMGEKMAHFIHHIFTFICGYAVGFKRSWKVSLVVFSVTPLTMFCGMAYKALYGGLTAKEEASYRKAGSIAEQAVSSIRTVFSFVAENQLAGKYAELLQQSAPIGAKVGFAKGIGMGVIYLITYSTWALAFWYGSILIAKNELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFYIIERIPEIDPYSPEGRKLSGVRGRIELKSVSFAYPSRPDSLILHSLNLILPSSKTVALVGASGGGKSTIFALIERFYDPTEGIITLDGHDLRTLQVKWLRDQIGMVGQEPILFATSILENVMMGKNNATKEEAISACIAADAHSFITSLPLSYDTQVGDRGTKLSGGQKQRIALARAMIKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNAHTIVVLQHGSVTEIGDHRQLMAKAGAYHNLVKLATEAISRPLAIENGIQKANDLSIYDKSVAALSGSRYVVDIPRPKDLISMHEEEKQEDMEDDEQDKKAKKYILSEIWKLQKPEFVMLFSGLILGMFAGAILSLFPLVLGISLGVYFGHDTSKMKREVAHLCLTLVGLGFGCILSMTGQQGLCGWAGSKLTQRVRDILFQSILKQEPGWFDFEENSTGVLVSRLSLDCVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFNWRLTLVAAAVTPFALGASYISLIINIGPRVDNDSYGKASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSEPARKSLRSSQLQGLMFGFFQGSMYGAYTLTLWFGAYLVEHHKAKLGDVFKIFLILVLSSFSVGQLAGLAPDTSMANTAIPAVQDIIKRRPLIDNHRAKGRKVDRSKPFNIEFKMVTFAYPSRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLIQRFYDPDQGKVMMSGIDLREIDVKWLRRQVALVGQEPALFAGSIRDNIAFGDPNASWTEIEEAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKHIQEALKNVAKEATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHDTLMASTQNGLYASLVRAETEANAFS 1509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02118 1509 ProSitePatterns ABC transporters family signature. 1402 1416 IPR017871 GO:0005524|GO:0016887
Spst4g02118 1509 Pfam ABC transporter 1282 1429 IPR003439 GO:0005524
Spst4g02118 1509 ProSitePatterns ABC transporters family signature. 757 771 IPR017871 GO:0005524|GO:0016887
Spst4g02118 1509 Gene3D ABC transporter type 1, transmembrane domain 1113 1259 IPR036640 GO:0005524|GO:0016020
Spst4g02118 1509 Gene3D ABC transporter type 1, transmembrane domain 248 331 IPR036640 GO:0005524|GO:0016020
Spst4g02118 1509 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1114 1254 - -
Spst4g02118 1509 Gene3D - 616 876 IPR027417 -
Spst4g02118 1509 Gene3D - 1261 1503 IPR027417 -
Spst4g02118 1509 MobiDBLite consensus disorder prediction 7 53 - -
Spst4g02118 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1263 1499 IPR003439 GO:0005524
Spst4g02118 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 295 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g02118 1509 FunFam ABC transporter B family member 1 1252 1503 - -
Spst4g02118 1509 CDD ABC_MTABC3_MDL1_MDL2 618 855 - -
Spst4g02118 1509 PANTHER ABC TRANSPORTER B FAMILY 257 854 IPR039421 -
Spst4g02118 1509 CDD ABC_6TM_Pgp_ABCB1_D1_like 295 591 - -
Spst4g02118 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 943 1227 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g02118 1509 FunFam Multidrug resistance protein 1, 2, 3 616 865 - -
Spst4g02118 1509 Pfam ABC transporter transmembrane region 942 1211 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g02118 1509 Pfam ABC transporter transmembrane region 294 565 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g02118 1509 SUPERFAMILY ABC transporter transmembrane region 929 1243 IPR036640 GO:0005524|GO:0016020
Spst4g02118 1509 FunFam ABC transporter B family member 19 281 613 - -
Spst4g02118 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 854 IPR027417 -
Spst4g02118 1509 Pfam ABC transporter 636 785 IPR003439 GO:0005524
Spst4g02118 1509 SUPERFAMILY ABC transporter transmembrane region 282 603 IPR036640 GO:0005524|GO:0016020
Spst4g02118 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 618 854 IPR003439 GO:0005524
Spst4g02118 1509 CDD ABC_6TM_Pgp_ABCB1_D2_like 930 1245 - -
Spst4g02118 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1259 1500 IPR027417 -
Spst4g02118 1509 MobiDBLite consensus disorder prediction 1 65 - -
Spst4g02118 1509 CDD ABC_MTABC3_MDL1_MDL2 1263 1501 - -
Spst4g02118 1509 Gene3D ABC transporter type 1, transmembrane domain 341 1104 IPR036640 GO:0005524|GO:0016020
Spst4g02118 1509 SMART AAA_5 645 846 IPR003593 GO:0016887
Spst4g02118 1509 SMART AAA_5 1290 1476 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02118 Spst-Chr4 61968098 61975510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02118 936 1506 Calmodulin-binding Proteins AT2G36910 37.847 5.71e-110 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02118 K05658 - gmx:100816700 2593.53