Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02116 ATGGACGACGACGATGAGATCCAGTCTCATCCGTCGCCGGCGAGCGGATCCCCGGCGTCATCGCCGCGGGCGAATGGACGGATAACGGTGACGGTCGCGGCGCCGGCGCCGCCTCCGCCGAATAGTTTGGCACTAGCGCTTCCGATTCAGCAGCCGGTGAAGGGGAACGGTGGCGGAGGAGGCGGCGGCGGTGGAGGAAGGGAGGATTGTTGGAGCGAAGGCGCGACGGCGGTGCTGATCGATGCATGGGGAGAGAGGTATCTGGAACTGAGCAGAGGAAATCTGAAACAGAAGCACTGGAAGGAGGTGGCGGAGATCGTGAGCGGCAGAGAGGATTACACGAAGGCGCCGAAGACCGATATTCAGTGCAAAAACCGGATCGACACCGTTAAGAAGAAGTACAAATCGGAGAAGGCGAAGATCGCCGCCGGCGCCACTAGCAAGTGGCCATTCTTCGACCGTTTGGACCAATTAATCGGTCCAAGTGCCAAGATCCCCGGCGCCGGCGGAGTCGCCGGAACCAGCGGTGCCGGAAACAGTATTTTACAGACCCAGAAAGTGCCGTTAGGGATTCCGGTGGGCGTTCGAGGCGGAGGGAATCAGTATCACCATCCTCAAAGGCAGGCGCAGCATACGCCGCAGCAGCAACAACCGCAGCCGGTTCCGTCGAAGAATCAGAAGATTCAGTTCCGGCGCCGCGGTCCACCGGTGGAATCTGATTCGGAGGAGCGTGGCGCGTCGTCGCCGGCTTCGAGCGACAGTTTTCCTCCGGAGAGTTTCGAGCGGAAGAGGCCCCGGGTGATGAGTTCGAACCCGACGAAAGGAAGCGAAGGAAGACGGAAGGCGAAGGGCTGGGGAAGCGCGGTGAGGGAACTGACGCAGGCGATTCTGAAATTCGGGGAGGCGTATGAGCATGCAGAGAGCTCGAAGCTGCAGCAAGTAGTGGAGATGGAGAAGCAGAGGATGAAGTTCGCGAAGGATTTGGAGTTGCAGAGAATGCAGTTTTTTATGAAGACCCAGTTGGAGATTTCGCAACTCAAGCTTGGAAGAAAAGGTGCTAACCCTAGCAACAATCACCATAGCACCACCAACAATAACAATAACAACAATCACAACAATAATAGTGACAGTGAGTGA 1137 0.5752 MDDDDEIQSHPSPASGSPASSPRANGRITVTVAAPAPPPPNSLALALPIQQPVKGNGGGGGGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSGREDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGATSKWPFFDRLDQLIGPSAKIPGAGGVAGTSGAGNSILQTQKVPLGIPVGVRGGGNQYHHPQRQAQHTPQQQQPQPVPSKNQKIQFRRRGPPVESDSEERGASSPASSDSFPPESFERKRPRVMSSNPTKGSEGRRKAKGWGSAVRELTQAILKFGEAYEHAESSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQLEISQLKLGRKGANPSNNHHSTTNNNNNNNHNNNSDSE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02116 378 MobiDBLite consensus disorder prediction 1 69 - -
Spst4g02116 378 MobiDBLite consensus disorder prediction 10 27 - -
Spst4g02116 378 MobiDBLite consensus disorder prediction 350 378 - -
Spst4g02116 378 MobiDBLite consensus disorder prediction 347 378 - -
Spst4g02116 378 MobiDBLite consensus disorder prediction 189 287 - -
Spst4g02116 378 FunFam trihelix transcription factor ASIL2 71 136 - -
Spst4g02116 378 Gene3D - 71 136 - -
Spst4g02116 378 MobiDBLite consensus disorder prediction 203 226 - -
Spst4g02116 378 Pfam Myb/SANT-like DNA-binding domain 68 158 IPR044822 -
Spst4g02116 378 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 27 348 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02116 Spst-Chr4 61949943 61951079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02116 1 360 Trihelix Transcription Factor Family AT3G14180 49.078 4.14e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst4g02116 Myb_DNA-bind_4 5.1e-26 CL0123