Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02104 ATGTGTGGGGGTGCGATCATCTCCGACTTCATTCCGGCAGGACCCCCCGGCCGGTCCCGCCGCGTGACCGCCGACATCCTGTGGCCGAATTTGAGAAAGCGGTTGTCGAAGCCTCTGCTGGACGATGATTTTGAGGCTGGGTTCAGAGAATTCAAGGATGACTCGGAAATCGAGGAAGATGATGAGGAGGATGAAGAGGAGGAGGACTTGACGGTGGTTGGTGTGAAGAAGCCCTTTGGCTTTTCTCGTCCCAACAAGGCTTCTAAGCCTCTTTCTCGTGGATCAACGACTGTGAAATCTGTGGAATCAAATGGGCAAGCTGAGAAGTGTGCTAAGAGAAAGAGGAAGAACCAGTATAGAGGAATTCGCCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATCCGCGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCAAGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAACCTTCAGCTGCTTCCTCAAAACGCCTCAAGGTGAATCCAGAGTCTCAACCATTGAAGCAAAATCTCAACTCTTTGAAGCCGAAAATGAACCAGATGTTCAATTTTGGTGACAATCTGGAGGACTACTACGGTCCTATAGATCAGGTGGAACAGAAACCACTGGTTAACCAATATGTTAACCCTGGCCCCTTTGCTGTAAACGGAGTTCAACTCTCACCTGTTACTCCATCTGCTGATGTTACTGCTTATTTCAGTTCTGAGCATTCAAGCAATTCATTTGATTATTCTGACCTTGGATGGGGTGAACAAGTCCCCAAGACTCCCGAGATCTCATCCATGCTTTCTGCTCCTTTAGAGGGTGAATCTCAGTTTGTGCAGAGTGCTGATCAGATTCAGAAGAAACAAACTCAGGACATGATGCCTGTGCAAGATGATTCTGCAAAGACACTTTCTGAGGAGCTTGCAGACATTGAATCCCAGCTGAAGTTCTTTGAGACCCCTTTGTTTGATGGAAGCTGGAGTGATGCTTCATTGGCGTCTCTGCTCGGCAACGATGCAACTCAGGATGCCGGAAACCCTTTGAACCTTTGGAGCTTCGATGACCTGCCATCCATGGCAGGTGTTTTCTGA 1161 0.4892 MCGGAIISDFIPAGPPGRSRRVTADILWPNLRKRLSKPLLDDDFEAGFREFKDDSEIEEDDEEDEEEEDLTVVGVKKPFGFSRPNKASKPLSRGSTTVKSVESNGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSAASSKRLKVNPESQPLKQNLNSLKPKMNQMFNFGDNLEDYYGPIDQVEQKPLVNQYVNPGPFAVNGVQLSPVTPSADVTAYFSSEHSSNSFDYSDLGWGEQVPKTPEISSMLSAPLEGESQFVQSADQIQKKQTQDMMPVQDDSAKTLSEELADIESQLKFFETPLFDGSWSDASLASLLGNDATQDAGNPLNLWSFDDLPSMAGVF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02104 386 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Spst4g02104 386 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Spst4g02104 386 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Spst4g02104 386 FunFam Ethylene-responsive transcription factor 2 117 176 - -
Spst4g02104 386 CDD AP2 118 176 IPR001471 GO:0003700|GO:0006355
Spst4g02104 386 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Spst4g02104 386 MobiDBLite consensus disorder prediction 54 69 - -
Spst4g02104 386 MobiDBLite consensus disorder prediction 88 104 - -
Spst4g02104 386 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
Spst4g02104 386 PANTHER DNA-BINDING DOMAIN 77 296 IPR044808 GO:0003700|GO:0009873
Spst4g02104 386 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Spst4g02104 386 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Spst4g02104 386 MobiDBLite consensus disorder prediction 50 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02104 Spst-Chr4 61863006 61865731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02104 1 382 AP2-EREBP Transcription Factor Family AT3G14230 44.903 8.33e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g02104 AP2 4.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02104 K09286 - gmx:100818646 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02104 4 61863006 61865731 Spst4g02104 4 61863006 61865731 ECH