Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02102 ATGGAGGAATCTGCATCTTCATCTTCATCTGTGACTATGGTCTCTACTCCTGAACACCATGATTTAACTAAAAAGATATTTCCAAAGAGATGTAATGAAGAGCCACGACTAAAGGAATTCATTTTTTCTGAAGCGTCAATTTGTGGAGTTGAAAACCACGTTACCAAACAGGATCACAGTGACATGCTATTGAGAATCCTCACTCGGAAACAAAAAAGGATCGGTCTTATGCAGTGTGGTATTTGCATGGATGTTAAACGTGGTGACGAAATGTTCAGGAACCGAAACTGTTGTCACTATTTTTGTGTTGGTTGCATTGGAGGATATGTGGCTGAAAAGATTGAGGAGAATATATTATTGGTGAAATGTCCTGAAGCACAATGCAAAGGGGTTCTGGAGGCTGAGTTGTTTGAAACAATCATTCCAAAGGAAGTGTTTGATAGATGGGACAATGGTCCTTCTGAGAATGTGGAGCTTGGATTACAAATGTTTTACTGTCCTTTCAAAGAATGTTCTGCAAACTTCATTGATGATCCTTTTGCAGTTACTTCTCAATGTCCACGTTGTAGGCGACTGTTTTGTGCAAAGTGCAAGGTTTTGTGGCATGAAGGGTTAGATTGCACTGAGTTTCTGAGTTTGAAGAAGGAACGGAGAAGGATGGATGATCTGTTAGCACTCGATGAAGCAGATTCACATATTTCTTCCTGGGGCATGGAGGGAGCTTCATCCGCATCTTCATCTATAACTTTGGTTTCTGCTGCTGATGAAGATGATCACATCCTATTCTTCTGTGGTATTTGCATGGATGCTAAAACCACTGGTGAAATGTTTGAGACTCCAAACTGTTATCACGCGTTTTGTGAGGATTGCGTGGGAAGATATGTGTTTGCAAAGGTTGTGGAAAATATATCAGAGGTGAAATGTCCTGATCCAGAATGCAGCCAGGTTATAGAGTCTCGACACTGTCGTTCAGTCCTCACTAAAGAAGTCTTTGATAGATGGGAAGATAACATTCGCGAGAATTTAGAGTTTGAATCACAGTTATACTGTCCTTTCAAGGATTGTTCTGCTATGTTGATTACTGACGAAGAGGATGTTGTGAGTGTTTCTGAATGTCCATATTGTAAGAGACAATTCTGTGCACGGTGCAAGGTTCCATGGCATGCAGGAGTAGATTGCATCGAGTTTCAGGGTCAAGATATACATTTCGAGAAGCTTGCTACGAAGAAAAGTTGGAAAAGATGTCCAAAATGCAGTTTTTATGTGGAGAGTGTGGGTGGATGTTCGCGTATTCGTTGCAGATGTGGGGATGAATTTTGCTATTCTTGTGGGTTGAAATGGGATAGTAGCAAGCACTATACATGTCAACCTCGTTAA 1377 0.4089 MEESASSSSSVTMVSTPEHHDLTKKIFPKRCNEEPRLKEFIFSEASICGVENHVTKQDHSDMLLRILTRKQKRIGLMQCGICMDVKRGDEMFRNRNCCHYFCVGCIGGYVAEKIEENILLVKCPEAQCKGVLEAELFETIIPKEVFDRWDNGPSENVELGLQMFYCPFKECSANFIDDPFAVTSQCPRCRRLFCAKCKVLWHEGLDCTEFLSLKKERRRMDDLLALDEADSHISSWGMEGASSASSSITLVSAADEDDHILFFCGICMDAKTTGEMFETPNCYHAFCEDCVGRYVFAKVVENISEVKCPDPECSQVIESRHCRSVLTKEVFDRWEDNIRENLEFESQLYCPFKDCSAMLITDEEDVVSVSECPYCKRQFCARCKVPWHAGVDCIEFQGQDIHFEKLATKKSWKRCPKCSFYVESVGGCSRIRCRCGDEFCYSCGLKWDSSKHYTCQPR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02102 458 SUPERFAMILY RING/U-box 261 341 - -
Spst4g02102 458 ProSiteProfiles TRIAD supradomain profile. 75 236 IPR044066 -
Spst4g02102 458 SUPERFAMILY RING/U-box 401 455 - -
Spst4g02102 458 SMART ibrneu5 147 207 IPR002867 GO:0008270
Spst4g02102 458 SMART ibrneu5 332 393 IPR002867 GO:0008270
Spst4g02102 458 SMART ibrneu5 401 455 IPR002867 GO:0008270
Spst4g02102 458 Gene3D - 392 457 - -
Spst4g02102 458 CDD BRcat_RBR_unk 348 396 - -
Spst4g02102 458 SMART ring_2 79 126 IPR001841 -
Spst4g02102 458 SMART ring_2 264 313 IPR001841 -
Spst4g02102 458 FunFam RBR-type E3 ubiquitin transferase 260 346 - -
Spst4g02102 458 SUPERFAMILY RING/U-box 76 151 - -
Spst4g02102 458 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 249 447 IPR031127 GO:0004842|GO:0016567
Spst4g02102 458 ProSiteProfiles TRIAD supradomain profile. 260 458 IPR044066 -
Spst4g02102 458 ProSiteProfiles Zinc finger RING-type profile. 79 124 IPR001841 -
Spst4g02102 458 CDD Rcat_RBR_unk 412 447 - -
Spst4g02102 458 ProSiteProfiles Zinc finger RING-type profile. 264 309 IPR001841 -
Spst4g02102 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 343 IPR013083 -
Spst4g02102 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 158 IPR013083 -
Spst4g02102 458 SUPERFAMILY RING/U-box 161 210 - -
Spst4g02102 458 ProSitePatterns Zinc finger RING-type signature. 282 291 IPR017907 -
Spst4g02102 458 ProSitePatterns Zinc finger RING-type signature. 97 106 IPR017907 -
Spst4g02102 458 FunFam RBR-type E3 ubiquitin transferase 75 160 - -
Spst4g02102 458 SUPERFAMILY RING/U-box 344 397 - -
Spst4g02102 458 Pfam IBR domain, a half RING-finger domain 348 393 IPR002867 GO:0008270
Spst4g02102 458 Pfam IBR domain, a half RING-finger domain 160 207 IPR002867 GO:0008270
Spst4g02102 458 Pfam IBR domain, a half RING-finger domain 402 455 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02102 Spst-Chr4 61849785 61851456 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02102 264 444 C3H Transcription Factor Family AT2G19610 26.500 1.54e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02102 K11975 - gmx:100815626 276.944