Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02100 ATGGAGGGAACTTCATCCGCATCTTCATCTTCGACTTTTCCCTCTACTGCTGAAGATCATGTTTTGGTTGACGATTTGTACTTTTCAGCACTCCACGATGCTGAAGAGATATTTCCAATCTCGGATGACAAATATGCTGAAGAGCTACAACTACAAGAAGTCCTCTATTCCTCAACATTGTCAAGTGCTAGAGTAGAAAACGAAGTTGTTCAAGTGGATATAGATGACGACGACGACGACGACATCCCTTTGAGAATCCTCAAGGGGAAAAATAAAGTGACCAGTGAATCTTCTCATGCCTACTGTGGTATTTGTATGGATGCTAAACCTGGAGAAGAAATGTTCAGGAACCAAAACTGTTTCCACTTTTTTTGCGACGATTGCGTTGGAAGATATGTAGCTGCAAAGATTCAGGAAAATATAACAATGGTGAAATGTCCTGAACCAAAATGCAAAGGGGTTCTGGAGCCACAGAACTGTCGTTCGATTATCCCCAAAGAAGTGTTTGACAGATGGGAAAATGCTCTTTGTGAGAATGTGGTGCTTGGAACACAAAAGTTTTACTGTCCTTTTAAAGATTGCTCTACTATGTTGATTGATGATGGAGATGAAATTATAACCGTTTCTGAATGTCCACATTGTAGCAGACTGTTTTGTGCACAGTGCAAGGTTTCATGGCATTCAGGATTGGATTGCAGTGAGTTTCAGAGTTTGAAGAAGGATGAGAGAGGGAAGGAAGATCTGCAGGTAGTGGAACTTGCTAAGAACAAAAGTTGGAGAAGATGTCCAAAATGCAATTTTTACGTAGAAAAAATTGATGGATGTACTCACATTTCTTGCAGGGCAAACAATGGAAGAACAGCAAACACAAGGAGGGGGAAGATTGAAATCAAAGAAGTTGAACAGAGAAACAGGCAATGCGTCACTTTTTCCAAACGCAAACTAGGGCTTTGCAACAAACTCACTGAACTCTCTCTTCTATGCAACGCAGAAACCGCTTTGATCATCACCTCCCAAAACGGCAACGTCTATTCGTGCGGCTACCCCAACGCTGACGCCGTCCTCCGCCGGTACATCACCGGAGGGCCACCGCAGCTGTGCAGCGGTGCAAACGACAAGGAGAAGGAGGAGTTTCTTGAAAAGCAAAGGCTGGAATATGAGAGCGTTCAGGAAAAGTTGAAAGAAAAGCAGAAGCAGTTGAAAGAGACGAAAGAGACTCAAAAGAATAGTTTTTGCTTTCCTCCTTGGTGGAATCTCCCCTCTGAGGATATGGGTTTGGAGGATCTTGAACAGTTTAAGACCTCCTTGGAAAGTTTGAAGTTTAACCTCATCGAAGCGTTGCAAGAGAAGAAGTTACAGAAGAACTTACCTTCACTTCCACCAATACCATATGCTATGGTTCCATCGCCACAGTTCCCAAACATGTCGAACTTGACTCAACTCTGCAGTGGAAATCAAGTTGAAAATGATGGGAACAGTAATGTTGCAAAAAAAACTGGTACAACTAAAAAGTTTTGTGCACATTGTTTTGGGAACACAAGACCACATGTTATGGTGCACAATGGTTGGTGTGTAAATGGGGGTAGAGGGTAA 1593 0.4256 MEGTSSASSSSTFPSTAEDHVLVDDLYFSALHDAEEIFPISDDKYAEELQLQEVLYSSTLSSARVENEVVQVDIDDDDDDDIPLRILKGKNKVTSESSHAYCGICMDAKPGEEMFRNQNCFHFFCDDCVGRYVAAKIQENITMVKCPEPKCKGVLEPQNCRSIIPKEVFDRWENALCENVVLGTQKFYCPFKDCSTMLIDDGDEIITVSECPHCSRLFCAQCKVSWHSGLDCSEFQSLKKDERGKEDLQVVELAKNKSWRRCPKCNFYVEKIDGCTHISCRANNGRTANTRRGKIEIKEVEQRNRQCVTFSKRKLGLCNKLTELSLLCNAETALIITSQNGNVYSCGYPNADAVLRRYITGGPPQLCSGANDKEKEEFLEKQRLEYESVQEKLKEKQKQLKETKETQKNSFCFPPWWNLPSEDMGLEDLEQFKTSLESLKFNLIEALQEKKLQKNLPSLPPIPYAMVPSPQFPNMSNLTQLCSGNQVENDGNSNVAKKTGTTKKFCAHCFGNTRPHVMVHNGWCVNGGRG 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02100 530 ProSiteProfiles Zinc finger RING-type profile. 102 150 IPR001841 -
Spst4g02100 530 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 77 347 IPR031127 GO:0004842|GO:0016567
Spst4g02100 530 PRINTS MADS domain signature 327 348 IPR002100 GO:0003677|GO:0046983
Spst4g02100 530 PRINTS MADS domain signature 292 312 IPR002100 GO:0003677|GO:0046983
Spst4g02100 530 PRINTS MADS domain signature 312 327 IPR002100 GO:0003677|GO:0046983
Spst4g02100 530 Pfam IBR domain, a half RING-finger domain 172 232 IPR002867 GO:0008270
Spst4g02100 530 ProSitePatterns Zinc finger RING-type signature. 120 129 IPR017907 -
Spst4g02100 530 ProSiteProfiles TRIAD supradomain profile. 98 315 IPR044066 -
Spst4g02100 530 FunFam RBR-type E3 ubiquitin transferase 97 183 - -
Spst4g02100 530 SUPERFAMILY RING/U-box 180 236 - -
Spst4g02100 530 SMART ibrneu5 170 232 IPR002867 GO:0008270
Spst4g02100 530 SUPERFAMILY RING/U-box 243 280 - -
Spst4g02100 530 CDD BRcat_RBR_unk 183 235 - -
Spst4g02100 530 SMART madsneu2 290 349 IPR002100 GO:0003677|GO:0046983
Spst4g02100 530 SUPERFAMILY SRF-like 291 368 IPR036879 GO:0003677|GO:0046983
Spst4g02100 530 ProSiteProfiles MADS-box domain profile. 290 350 IPR002100 GO:0003677|GO:0046983
Spst4g02100 530 Coils Coil 376 410 - -
Spst4g02100 530 Coils Coil 429 449 - -
Spst4g02100 530 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 301 345 IPR002100 GO:0003677|GO:0046983
Spst4g02100 530 SUPERFAMILY RING/U-box 97 179 - -
Spst4g02100 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 183 IPR013083 -
Spst4g02100 530 Gene3D - 301 387 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02100 Spst-Chr4 61836623 61844630 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02100 292 459 Type I MADS-box Gene Family AT5G60440 31.395 2.46e-20 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst4g02100 IBR 3e-10 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02100 K11975 - gmx:100816161 420.239