Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02099 ATGATGCTGAGCTCTATTCGTGTGCCTACCCCATTTCCGACGTCGTCCTTCCTTCGCCGCTACGTCAGCGGAGGGCCGCCCAGCGCAGCCGTGGAAGTAAGATGGGCAGGAGGAGTTTCTTGGAAAGCAAAGGCTGGAATACGAGCCCTTGAAGAACTCCTTAGAACGTTTGAAGTTTCGACCTTAGGGAAGAAGTTAGGTTCAACTGCACCAATGTCATCTATTATAGCTCCACCAAATGCCCTATGCTATGCTTCAACCACCACCAAACATGTTGCAGTTGATTCTGCGCTTCAGTGGAAACCCGTTTCACGATCATGGGAGAGTGTTGGAACAAGGGGTTTTGGCCATTTAGGGCTTATTACTTACACTTACAGGAATGTTAACTACTTTCAGTTCTTGTTTAATGTTGTTTCTAAGATAAAAGGCCAATGTTGGATCAATGTGGTAGTTCCCAACCACAGGCCAAGGAAGTTGTCTGGTAGAAATTCACCTTTTGCGTTCTCTGTGCTTGCAATTCCTCAACTTCTCTTTCTACGCCTCTTCGTAAAATGCATATATCATGCAATACTAAGTTTTCCACATGGAAAAGTTTTATGTGGGAGAAAGGAGGGAACTTCAACCGCATCTTCGTCTATGACTTTTTCCTCTACTGCTGAAGATCATCATTTAGTTGACGATTTTTACTTTTCCCCACTACATGATGATGCAGAGATATTTCCAATCTCGGATGAGAAATATGCTGAAGCGCTACTACAACTACAAGAAATCCTCTATTCCTCTATTACATCGTCATGTGCTAGAGTTGAAAAAAAGAAAGACATCCCTTTGATAACCCGCAAGGGGAAACAGAAAATGACCGGTGAATCTTCACGTTTCTACTGTGCTGGAAAGATTCAGGAAAATATATCAATGGTGAAATGTCCTGAACCAAAATGCAAAGGGATTCTGGAGCCTCAGGACTGTCGTTCAATTATCCCTAAAGAAGTGTTTGATAGATGGGAAAATGCTCTCTGTGAGAATGCGGTGCCTGCATCACAGAAGTTTTACTGTCCTTTAAATTGTTCTGCTATGTTGATTGATGATGGAGATACTTTTATAACTGTTTCTGTATGTCCACATTGCAACAGACTATGTGCACTATGCAAGGTTCCATGGCATTCAGGGTTGACTTGCAGAAAGTTTCAGGGCTTGAAGAAGAATGAGAGAGAGATGGAAGATCTGCTGGTGTTTCAACTTGCTAAGAACAATAGATGGAAAAGATGTCCAAAATGCAAATTCTATGTGGAAAAAACCGAAGGATATGTGGGAATGGATTTTGCTACGAGTGTGGATCCTCTTGGAGTCGTCATCATGCATGTATGTTCTAAAATTATTGCCAAAGACTTGCACGAGGCAAGTGAATTTTCAGAGAACAGCAACATTATTGTGATTGTGAGAACAGCAACGTTGTTGTGA 1458 0.4211 MMLSSIRVPTPFPTSSFLRRYVSGGPPSAAVEVRWAGGVSWKAKAGIRALEELLRTFEVSTLGKKLGSTAPMSSIIAPPNALCYASTTTKHVAVDSALQWKPVSRSWESVGTRGFGHLGLITYTYRNVNYFQFLFNVVSKIKGQCWINVVVPNHRPRKLSGRNSPFAFSVLAIPQLLFLRLFVKCIYHAILSFPHGKVLCGRKEGTSTASSSMTFSSTAEDHHLVDDFYFSPLHDDAEIFPISDEKYAEALLQLQEILYSSITSSCARVEKKKDIPLITRKGKQKMTGESSRFYCAGKIQENISMVKCPEPKCKGILEPQDCRSIIPKEVFDRWENALCENAVPASQKFYCPLNCSAMLIDDGDTFITVSVCPHCNRLCALCKVPWHSGLTCRKFQGLKKNEREMEDLLVFQLAKNNRWKRCPKCKFYVEKTEGYVGMDFATSVDPLGVVIMHVCSKIIAKDLHEASEFSENSNIIVIVRTATLL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02099 485 SMART ibrneu5 332 392 IPR002867 GO:0008270
Spst4g02099 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 347 IPR013083 -
Spst4g02099 485 Pfam IBR domain, a half RING-finger domain 333 392 IPR002867 GO:0008270
Spst4g02099 485 SUPERFAMILY RING/U-box 403 436 - -
Spst4g02099 485 ProSiteProfiles TRIAD supradomain profile. 260 476 IPR044066 -
Spst4g02099 485 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 276 436 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02099 Spst-Chr4 61798599 61801981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02099 308 438 C3H Transcription Factor Family AT2G19610 29.167 1.09e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02099 K11975 - gmx:100816161 305.064