Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02097 ATGTTTCCCTTCCATCCTCAAGGAGCTCCCAAACACGCCTGCACTCTTCTCGCTGTGACCTGTGGCGGTAGTTTAGCCGAGAACAAGTCCTCACAGCATCAGCGCAAATATCCTTTCCCGGAGCTAGTTTCGGCGGGGCGTCTTGAGGTCCAAACTCTTCACAATCCGGATAAGGAACAGTTTCTGAAAGTGCTGGAGTCTTATCAACCAAATTTTGTATATTTGCAAGGAGAACAGCTAGAGAATGGAAAAGTTGGTTCGCTGGCTTGGCAAGGTGTGGAGTTATCGACTTCTGAAGATATCATAGAGCTCTTTGGTTTCACATTGCCGACGGCTGTTTATTTAGAAATACCAAATGGAGAAAGTTTTGCCGAGGCTCTGCATCTTAAGGGAATACCATATGTTATATTTTGGAAGAATGCCTTTTCTTCTTATGCTGCTTGCCATTTTCGTCAAGCATTTCTGTCAGTAGTACAGAGTTCATCTACACATACATGGGATGCTTTCCACCTTGCACGTGCCTCTTTTGAACTTTATTGTGTCCAAAACAATCAAGTACTTCCTACTGATAGCCATGATACTAGTAGTGAGATGGGACCACACCTTCTTGGTGATTGTCTCAAAATCAATGTTGAACCTCCAGAGATTGATGAGGAAGATGATGACGAAAGCTCCTCAGGCACTCTGCCTGCCATAAAGATACATGAAGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCACCTTCGATTGTTAATGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAGCTATTGAAATCCGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCAGCCACTTTTTCTCGTGGAGTAGTGACCATGCGATGTGATATATCAACCTGTAGTTCTGCTCATATCTCACTTCTGGTATCTGGCAGTGCACAAACTTGTTTTAATGATCAGCTCTTGGAGAGTCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCATGCACAACTCAACAATGAGGGAAACAAACAGAACATCTCTGAACCACGCAGATCTGCTTCTATTGCCTGTGGAGCACCAGTATTTGAAATTTGTATGAAGCTTCCTCAATGGGCTTTGCAGGTTTTGAGACAGCTAGCACCTGAGGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAGGGGTTGCCTATAGCTTCTTTTGAGAAAGATGATGCTGAGCGCTTACTTTTCTTCTATCGAAGTTGTGAGAAAGATAGTGGTATGAACAAAAATAATATAATATTTAGCAGCCCCCCTGGTTGGTTGAAACCACCCCCTCCTAGAAGAAAAAGTAGTGAACCAAGCCAAGGGGCTAGCCCTGGTCGTCATGAAGGTGTCTTTGTTGGGCAGGGCACTGTTTGTAAAGTAAATGATGAAGAACAGGATAGAAAAATGGCGAATGGGATTAGCACACCCTTAACTCCTGCTAGACAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCACATTCGTCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGACAGATGGTTTTGATGGTGCCCAAGTAGAGGCTAATTTGCCACTTGTTGCCCCTACAAAGCGAAGTGGTATTGGATCAACGTCTGCAACACACAGAAAATCATCATTTTCAAGCGCAGCTCAATCAAAGCAGGTTATTTCGCTGAACCCATTGCCCCTTAAGAAACATGGTTGTTGTAGAGGCCCAGTCCAGACATGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATACTCCGGGGACATAATCGACTAATTCCGCAAGGAGGGCTTACTGAGTTCCCCGATGCCATACTCAATGGAAAACGTCTTGATCTATACAATTTGTATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGGCAAATCTTTTCAAAGATGCGCAATTACACCACGACCAATAGAATGACTGGTGTTGGAAATACTCTGAAAAGACATTATGAGACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGCGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCAAAAACTGATGGGCTAGAATATATATGTCCTCATTGTAGTGTGGCAAATTTCAAGAAGAAACAAAATGTTGCTAATGGGTATTCTCAAGGTTCAGTGTCTTCACGAATCCTTTGA 2352 0.4345 MFPFHPQGAPKHACTLLAVTCGGSLAENKSSQHQRKYPFPELVSAGRLEVQTLHNPDKEQFLKVLESYQPNFVYLQGEQLENGKVGSLAWQGVELSTSEDIIELFGFTLPTAVYLEIPNGESFAEALHLKGIPYVIFWKNAFSSYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVQNNQVLPTDSHDTSSEMGPHLLGDCLKINVEPPEIDEEDDDESSSGTLPAIKIHEDEVNLRFLICGAPSIVNESLLRSLEDGLRALLAIEIRGCKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKSQLVHAQLNNEGNKQNISEPRRSASIACGAPVFEICMKLPQWALQVLRQLAPEVSYRSLVALGIASIQGLPIASFEKDDAERLLFFYRSCEKDSGMNKNNIIFSSPPGWLKPPPPRRKSSEPSQGASPGRHEGVFVGQGTVCKVNDEEQDRKMANGISTPLTPARQRLKVSAMRPIPHIRRHRMTPFCGPSETDGFDGAQVEANLPLVAPTKRSGIGSTSATHRKSSFSSAAQSKQVISLNPLPLKKHGCCRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANFKKKQNVANGYSQGSVSSRIL 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02097 783 CDD PHD_ARID4_like 707 758 - -
Spst4g02097 783 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 779 IPR042293 -
Spst4g02097 783 CDD ARID 599 697 - -
Spst4g02097 783 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Spst4g02097 783 SMART bright_3 598 702 IPR001606 GO:0003677
Spst4g02097 783 SUPERFAMILY FYVE/PHD zinc finger 700 767 IPR011011 -
Spst4g02097 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 763 IPR013083 -
Spst4g02097 783 SMART ARID_2 594 697 - -
Spst4g02097 783 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677
Spst4g02097 783 MobiDBLite consensus disorder prediction 441 474 - -
Spst4g02097 783 Gene3D - 594 700 IPR036431 GO:0003677
Spst4g02097 783 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02097 Spst-Chr4 61775583 61782792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02097 4 772 ARID Transcription Factor Family AT3G43240 59.794 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Spst4g02097 ARID 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02097 - - gmx:100816540 1421.76