Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02088 ATGGATACGATCAAGTCATTCAAGGGCTACGGCAAAGTCGACGAATTGGAGCAGCAAGCCTATAAGAAGAAGACACGTAAGCGTCTCATAATCATCACAGTTTCTTCCATCGTTCTAATCGCGGTCATCATCGCCGCGGTTGCAGGGGTCGTCATACACAAGCGCAACACTCATTCTTCACCCTCATCTGACTCAGCCCCGCAAACTGAGTTAACTCCAGCCGCGTCACTCAAAGCAGTGTGCGACGTGACTCGGTACCCTAACTCCTGCTTCTCTGCCATATCCTCTTTACCGGAATCCAACACCACCGACCCTGTGCTTCTCTTTAAGCTCTCGCTGCGCGTTGCCATTGACGAGCTCTCCAAGCTCTCGAGCTTCCCCTCCAAGCTTCGCGCCAATGCGGAGCACGACGCACGCCTCCAGAAGGCGATCGACGTCTGTGGTTCCGTCATCGGCGACGCGCTGGACCGCCTCAATGACTCGATTTCCGCCCTCGGAAAAGTCACCGGGAAGATTGTGTCTCCGGCGAGCGTCAGCGACTTGGAGACGTGGCTCAGCGCGGCGCTCACGGACCAGGACACGTGCCTCGACGCGCTTGGTGAGTTGAATTCCACCGCCGCGCGAGGCGCGCTCCAGGAGATCGATACCGCCATGAGAAACTCCTCAGAGCTTGCGAGCAACAGCTTGGCTATCGTGACGAAGATCTTAGGGTTGCTGTCGCGGTTCGAGTCGCCGATTCACCACCGGCGGCTGCTAGGGTTTCCGGAGTGGGTGGGTGCGGTGGAGCGGAGGCTGCTGGAGGAGAAGAGCAACGACTCAACGCCAGACGCTGTGGTGGCGAAGGACGGTAGCGGACATTTCAAGACGATCGGTGAGGCGCTGAAGTTGGTGAAGAAGAAGAGCGAGAAGAGATTCGTGGTGTACGTGAAGGAAGGGAGCTACGTGGAGAACATCGATTTGGATAAGGACACGTGGAATGTGATGATCTACGGTGATAGCAAGGACAAAACCGTCGTCGTCGGTAGCCGGAACTTCATGGACGGAACGCCGACTTTCGAAACTGCAACTTTCGCTGTTAAAGGCAAGGGATTCATTGCCAAAGACATAGGGTTTGTGAACAATGCAGGTGCTTCTAAGCACCAGGCTGTAGCATTTAGATCTGGTTCGGATCGCTCTGTGTTCTACAGATGTTCATTTGATGGCTTCCAAGATACCCTCTATGCTCATTCCAACCGCCAATTCTACCGTGAGTGTGACATTTCAGGCACCATTGACTTCATATTTGGCAATGCAGCTGTTGTGTTCCAAAGTTGCAATATAATGCCTAGACAACCCCTACCAAACCAGTTCAACACCATCACAGCTCAGGGAAAGAAAGACCCTAACCAGAACACTGGAATTATAATCCAGAAATCAACAATGACTCCCCTGGGCAACAATCTCACAGCTCCCACATACCTTGGCAGGCCATGGAAAGATTTCTCCACCACTGTCATCATGCAATCTGATATTGGCTCATTCCTGACACCGGTGGGGTGGATTAGTTGGGTCCCTGACGTGGAACCTGCAAGTACCATCTTCTATGCTGAATACCAGAATACTGGGCCAGGCGCTGACGTGTCCCAGAGGGTCAAATGGGCCGGTTATGAGCCCACTCTCACGGACCGTGATGCTGAGAAGTTCTCTGTGCAGTCCTTTATCCAAGGCCCTGAGTGGTTGCCGAATGCAGATGTGCAGTTTGATTCCACCTTGTGA 1755 0.5333 MDTIKSFKGYGKVDELEQQAYKKKTRKRLIIITVSSIVLIAVIIAAVAGVVIHKRNTHSSPSSDSAPQTELTPAASLKAVCDVTRYPNSCFSAISSLPESNTTDPVLLFKLSLRVAIDELSKLSSFPSKLRANAEHDARLQKAIDVCGSVIGDALDRLNDSISALGKVTGKIVSPASVSDLETWLSAALTDQDTCLDALGELNSTAARGALQEIDTAMRNSSELASNSLAIVTKILGLLSRFESPIHHRRLLGFPEWVGAVERRLLEEKSNDSTPDAVVAKDGSGHFKTIGEALKLVKKKSEKRFVVYVKEGSYVENIDLDKDTWNVMIYGDSKDKTVVVGSRNFMDGTPTFETATFAVKGKGFIAKDIGFVNNAGASKHQAVAFRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDISGTIDFIFGNAAVVFQSCNIMPRQPLPNQFNTITAQGKKDPNQNTGIIIQKSTMTPLGNNLTAPTYLGRPWKDFSTTVIMQSDIGSFLTPVGWISWVPDVEPASTIFYAEYQNTGPGADVSQRVKWAGYEPTLTDRDAEKFSVQSFIQGPEWLPNADVQFDSTL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02088 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 236 IPR035513 -
Spst4g02088 584 FunFam Pectinesterase 73 236 - -
Spst4g02088 584 Pfam Plant invertase/pectin methylesterase inhibitor 77 231 IPR006501 GO:0004857
Spst4g02088 584 ProSitePatterns Pectinesterase signature 1. 301 320 IPR018040 -
Spst4g02088 584 FunFam Pectinesterase 270 584 - -
Spst4g02088 584 Pfam Pectinesterase 276 569 IPR000070 GO:0030599|GO:0042545
Spst4g02088 584 ProSitePatterns Pectinesterase signature 2. 420 429 IPR033131 -
Spst4g02088 584 SMART PMEI_2 72 231 IPR006501 GO:0004857
Spst4g02088 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 236 IPR035513 -
Spst4g02088 584 SUPERFAMILY Pectin lyase-like 274 581 IPR011050 -
Spst4g02088 584 CDD PMEI-like_3 79 235 - -
Spst4g02088 584 Gene3D - 270 584 IPR012334 -
Spst4g02088 584 PANTHER PECTINESTERASE 38 574 - -
Spst4g02088 584 NCBIfam pectinesterase inhibitor domain 64 235 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02088 Spst-Chr4 61699448 61701960 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02088 1 578 Carbohydrate Esterase AT1G53840 58.615 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02088 - - pvu:PHAVU_010G123100g 1017.68