Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02087 ATGACTAACCCAAAACTTCCCTACGCCGGAATCGGAGATTCCGGCAACCACATTTCCCTCTCTAAAAAGGCCCACAACAAGAAAAAGAAGCTCTTCCTCACATTCTTCGCCACCCTCCTGGTGGCGGCCTCCGTCGCGGCCATCGTCGCCGGAGTAAAAAACAAAAACAAAAATTCCGACAGCACCAGCAGCACCCCGCTCTCCCTCTCCCACCACTCCCACACGATCATCAAGAGCGCGTGCAGCTCCACATTCTATCCAGAACTCTGTTTCTCAGCGGTGGCTTCAGAACCCAATGTCACCCACAGGGTAACCTCTCACCGTGACGTCATTCAGGTCTCCCTCAACATCACCACGCGCGCGGTGGAACACAACTACTTCACCGTGAAGAAGCTTATTGCCAAACGCGGCCTCACGAAGCGCGAGAAAATTGCGCTCCACGATTGCCTCGAAACCATCGATGAGACCCTGGACGAGCTGAAAGAGGCTCGGAAGGACCTCGAGCTCTACCCCAACAAGAAAACTCTCTACCAGCACGCCGACGACCTCAAAACGTTAATCAGTGCCGCCATAACCAACCAGGTCACGTGCCTCGACGGCTTCTCGCACGAGGATGCCGATAAGCGCGTGCGGAAGGCTCTGGAAGAAGGACAGGTGCACGTGGAACACATGTGCAGCAATGCACTCGCTATGACCAAGAACATGACCGACACCGACATTGCCATTTTCGAACAAAATATGAAGCTAGGAGACAACAACGTTGGCAAAAATAGAAAGCTCTTGGCGGGGGAGAGTAATGCCAATGGCGATGGTGTTGTGTGGCCGGAGTGGATTTCTGCTACTGACAGAAGGCTGCTTCAGGCGGCGGAGGTGAAGGCTGATGTGGTGGTGGCGGCGGACGGTAGTGGAGACTTTAAGACGGTGTCGGAGGCGGTGGAAGCTGCTCCGTTGAAGAGTAGTAAGAGGTATGTTATAAGGATAAAGTCTGGAGTTTATAGAGAGAATGTGGAAGTTCCTAAGAAGAAGGACAATATCATGTTCTTGGGGGATGGAAGAACCAGCACTATCATCACAGGTAGCAGAAATGTCGTTGATGGTAGCACCACCTTCCATTCTGCCACCGTCGCTGTTGTGGGTGGAAATTTCCTGGCCCGGGACATAACATTCCAAAACACAGCGGGGGCCTCAAAGCACCAAGCTGTGGCCCTAAGAGTAGGAGGGGACCTCTCAGCATTCTACAACTGTGACATCTTAGCATTCCAAGATACCCTTTATGTCCACAACAACCGTCAATTCTTTGTGAAGTGCCTCATTGCAGGGACAGTGGATTTCATCTTTGGTAACTCTGCAGTGGTGTTCCAAGACTGTGATATCCACGCTAGGCGTCCCGACTCGGGCCAGAAGAACATGGTCACGGCCCAGGGAAGAGTTGACCCTAACCAAAACACAGGCATTGTGATCCAGAAGTGCAGGATTGGTGCCACTCAGGACTTGGAGGCTGTGAAGAAGGATTTCAAAACATATCTTGGGAGGCCCTGGAAGGAGTACTCTAGGACTGTAATCATGCAGAGTAGTATCAGTGATGTGATTGACCCTGTTGGGTGGCATGAATGGAATGGCAACTTTGCATTGAGCACTTTGGTCTATAGGGAGTATCAAAACACTGGGCCTGGTGCTGGAACCTCCAATAGGGTCTCATGGAAAGGGTTCAAGGTCATCACTGATGCTGCTGAGGCCCGGGCTTTTAGCCCCGGAAGCTTCATTGGGGGTTCCAGCTGGTTGGACTCAACAGGCTTTCCTTACTCTCTTGGCTTGTAA 1818 0.5193 MTNPKLPYAGIGDSGNHISLSKKAHNKKKKLFLTFFATLLVAASVAAIVAGVKNKNKNSDSTSSTPLSLSHHSHTIIKSACSSTFYPELCFSAVASEPNVTHRVTSHRDVIQVSLNITTRAVEHNYFTVKKLIAKRGLTKREKIALHDCLETIDETLDELKEARKDLELYPNKKTLYQHADDLKTLISAAITNQVTCLDGFSHEDADKRVRKALEEGQVHVEHMCSNALAMTKNMTDTDIAIFEQNMKLGDNNVGKNRKLLAGESNANGDGVVWPEWISATDRRLLQAAEVKADVVVAADGSGDFKTVSEAVEAAPLKSSKRYVIRIKSGVYRENVEVPKKKDNIMFLGDGRTSTIITGSRNVVDGSTTFHSATVAVVGGNFLARDITFQNTAGASKHQAVALRVGGDLSAFYNCDILAFQDTLYVHNNRQFFVKCLIAGTVDFIFGNSAVVFQDCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATQDLEAVKKDFKTYLGRPWKEYSRTVIMQSSISDVIDPVGWHEWNGNFALSTLVYREYQNTGPGAGTSNRVSWKGFKVITDAAEARAFSPGSFIGGSSWLDSTGFPYSLGL 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02087 605 CDD PMEI-like_3 79 236 - -
Spst4g02087 605 ProSitePatterns Pectinesterase signature 2. 438 447 IPR033131 -
Spst4g02087 605 Pfam Plant invertase/pectin methylesterase inhibitor 76 231 IPR006501 GO:0004857
Spst4g02087 605 NCBIfam pectinesterase inhibitor domain 67 235 IPR006501 GO:0004857
Spst4g02087 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 236 IPR035513 -
Spst4g02087 605 SUPERFAMILY Pectin lyase-like 291 604 IPR011050 -
Spst4g02087 605 Coils Coil 146 170 - -
Spst4g02087 605 SMART PMEI_2 72 231 IPR006501 GO:0004857
Spst4g02087 605 Gene3D - 288 605 IPR012334 -
Spst4g02087 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 236 IPR035513 -
Spst4g02087 605 FunFam Pectinesterase 73 236 - -
Spst4g02087 605 Pfam Pectinesterase 294 590 IPR000070 GO:0030599|GO:0042545
Spst4g02087 605 PANTHER PECTINESTERASE 44 595 - -
Spst4g02087 605 ProSitePatterns Pectinesterase signature 1. 319 338 IPR018040 -
Spst4g02087 605 FunFam Pectinesterase 288 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02087 Spst-Chr4 61676246 61680573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02087 20 605 Carbohydrate Esterase AT3G14310 70.333 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02087 K01051 - pvu:PHAVU_010G123100g 1033.48