Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02081 ATGGGTCCAATTAGTGCAGCCTCGGTGTCTAGTGACAACGCATTGGTTGAATCTGGCACAATTGAGATAACTGGGAAGATTATGGTGGTGGCTATAATATTCCTTTTCATGGTGGTTGTGTTTGTTCTTGTGCTTCATCTATATGCAAGATGGTTCTGGTGGAGCCTGGAGGAGAACGCCGCTCCTCAGCCTCGCCAGCGGCGTCGGAGGCGCCGCCGGTTTGTCTTCACCCCGGGGCAAGAACCGGTGATCTATGAGACTCACCAAGTTGGACTTGACCCTTCAGTTTTAAAGTCCTTGCCAGTGTTGGTGTTCCAACATGAGGACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTGTTCAAGGGGAAAAGGCCAGGCTTTTGCCCAAATGTAATCATGGATTTCATGTGGATTGCATTGACATGTGGTTCCATTCACACTCTACTTGTCCTCTTTGTAGGAACCCGGTTGCTTATGAATCCTCTAAAAAAAGTGAAGAGAATAATTTCTCAGGGAACATGGAGTCATCATCATCATCCCATGAAGAGAATTCAGGTGCTGTGAGCGGCTTGGAGTCTTCAATTTTTCCCACAAATGTGTTGGTTTGGGGGAACCAGACACAAGTTAGATCTTTTGGGGTTTCCTTGGAAGATGAAGAAGAAGGGAGTTCTCAGCAGCCACCCTGTTCTCCATCTTTTACACCATCTTCTTCTTCCGATGGTTGTAATGTTAATGGTAGGTGTCATGGAATGTTGGTGATTGATATTCCAAGTGAGTGCACTTCTTCCTCTTTATCCCCTTCTGGAAGTAGGTGTGCTGAAGACGAGGTGAAATCACCAATGGCTGCCACATTGAGGTCATTTAAGAGGCTTTTGAGCAGGGACAAAAAGTTAAGTCCTTGCACTCCAAGTTCTGTAGATGTGGAACAAGCACAAAGCTAG 954 0.4602 MGPISAASVSSDNALVESGTIEITGKIMVVAIIFLFMVVVFVLVLHLYARWFWWSLEENAAPQPRQRRRRRRRFVFTPGQEPVIYETHQVGLDPSVLKSLPVLVFQHEDFKEGLECAVCLSEIVQGEKARLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVAYESSKKSEENNFSGNMESSSSSHEENSGAVSGLESSIFPTNVLVWGNQTQVRSFGVSLEDEEEGSSQQPPCSPSFTPSSSSDGCNVNGRCHGMLVIDIPSECTSSSLSPSGSRCAEDEVKSPMAATLRSFKRLLSRDKKLSPCTPSSVDVEQAQS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02081 317 SMART ring_2 116 157 IPR001841 -
Spst4g02081 317 MobiDBLite consensus disorder prediction 168 193 - -
Spst4g02081 317 MobiDBLite consensus disorder prediction 217 240 - -
Spst4g02081 317 Pfam Ring finger domain 115 158 IPR001841 -
Spst4g02081 317 MobiDBLite consensus disorder prediction 264 283 - -
Spst4g02081 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 184 - -
Spst4g02081 317 FunFam RING-H2 finger protein ATL3 85 163 - -
Spst4g02081 317 SUPERFAMILY RING/U-box 96 163 - -
Spst4g02081 317 CDD RING-H2_EL5-like 115 158 - -
Spst4g02081 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 163 IPR013083 -
Spst4g02081 317 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02081 Spst-Chr4 61632497 61633450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02081 22 300 C3H Transcription Factor Family AT1G53820 43.624 4.00e-65 206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02081 4 61632497 61633450 Spst4g02081 4 61632497 61633450 ECH