Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02080 ATGGTAAAGAATGAAACGTGTGTATGCGAAGGAGATGCCAACAGAGGAAGCAAGGTGAGTGAGTCGGTACTTGAAAATGATTGCATACAGGAAAAGACCAATTTAAATCCAACTTGTGGTTTCTCCCGACTCAATCATCAAGAAGCCAACATGAATACCATTCACACCTTCCTCACAGCCATTGTTCTTGTGGCTCAATCATTCCAAAGCTACATGATCCAGAGGCTGCACAAAATCTACAAGCATTTTGGATATGCTGTTGCAGGGAAGGATCATGAAGATCATGAAAGTGATTTTTGTTCTGTGTGTCTGAGCCAAATTTGTAAGGGGGAAAAAGTTAGGTCTCTTCCAGTATGCAACCACAGGTACCATGTTGATTGTATTGGAGCTTGGCTGAAGAACCATGCCACATGCCCTCTTTGTAGGAACAAAATCACTGATCATATCCCCCCAAAACATAAACAGGTGAAGACCTTAGGAGAGTCTGTGTTTAATCTCATACAGAGTTTCTCAGATCTATTGGTTGCTATCCTCTACATGGTACTTCCATCTAGCATCACTGAGAGTTTCCCTTTGGTTCATTAA 585 0.4171 MVKNETCVCEGDANRGSKVSESVLENDCIQEKTNLNPTCGFSRLNHQEANMNTIHTFLTAIVLVAQSFQSYMIQRLHKIYKHFGYAVAGKDHEDHESDFCSVCLSQICKGEKVRSLPVCNHRYHVDCIGAWLKNHATCPLCRNKITDHIPPKHKQVKTLGESVFNLIQSFSDLLVAILYMVLPSSITESFPLVH 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02080 194 CDD RING-H2_PA-TM-RING 100 142 - -
Spst4g02080 194 SUPERFAMILY RING/U-box 91 148 - -
Spst4g02080 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 148 IPR013083 -
Spst4g02080 194 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Spst4g02080 194 SMART ring_2 100 141 IPR001841 -
Spst4g02080 194 Pfam Ring finger domain 100 142 IPR001841 -
Spst4g02080 194 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 66 146 IPR044675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02080 100 145 C3H Transcription Factor Family AT1G53820 58.696 3.11e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02080 - - gmx:100500375 250.751