Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02075 ATGACCATGATGACCACCAACACCAATATCAACAACAACAACAACGTTGGAGAATTTGGGGACACCACTCTGACCAAGGTTTTTGTTGGGGGCTTAGCATGGGAGACTCCCAAGGATGCCCTCAGAGACCACTTTGAGAAGTATGGAGAGATCCTTGAAGCTGTCATCATTTCTGATAAGCTTACTGGCAAATCCAAGGGCTATGGCTTTGTGACTTTCAAAGAGGCTGGGGCTGCCAAGAAGGCTTGCGAGGACTCAGCAACTCTTGTTATCAATGGCCGTCGAGCTAACTGCAATCTGGCTTTCTTAGGTGCTCGTCGTCCAAGGTCTTCTTCCACTGCTTCACCACCCCCACAACCACAAGGAGGATCAAACAGTGCAGCAGTTAAGAACAATGCAGCAGCGAATCACGTGCAGCCATATTATCATCCAATGAGGACAACTGCTATGCCCTTCCATAATCAACCGCTTCCTTTCTATGGGTACACTCCAACCTACATTGTGACAGACATAAACTACAATTACAATCAGAAGCTGAGCTATGGCAATGGTGGGGCCTTCATGAATGGGCAGCAGTTGTCCCATGTGTACCCGAGGCAGGGTATTGTAGGAGGCAACACAGTGATGCCAGTGTACCCTCTCTATCAGTATCATCATCCAACGGAAACCATAGGCCTACCAGCTCACAGCTTTTATCCAACGACACCCTGGGCCCCATTCACCATCATTTCCAAACCATCCTCTATCATTCCTCATACAGGTACAGTTGGCACAGGTGAGTGCTTTAAAAGGGTTGTCTGA 801 0.4819 MTMMTTNTNINNNNNVGEFGDTTLTKVFVGGLAWETPKDALRDHFEKYGEILEAVIISDKLTGKSKGYGFVTFKEAGAAKKACEDSATLVINGRRANCNLAFLGARRPRSSSTASPPPQPQGGSNSAAVKNNAAANHVQPYYHPMRTTAMPFHNQPLPFYGYTPTYIVTDINYNYNQKLSYGNGGAFMNGQQLSHVYPRQGIVGGNTVMPVYPLYQYHHPTETIGLPAHSFYPTTPWAPFTIISKPSSIIPHTGTVGTGECFKRVV 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02075 266 Gene3D - 5 115 IPR012677 -
Spst4g02075 266 MobiDBLite consensus disorder prediction 107 128 - -
Spst4g02075 266 PANTHER BOULE-RELATED 10 227 - -
Spst4g02075 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Spst4g02075 266 FunFam Putative RNA-binding protein ARP1 19 109 - -
Spst4g02075 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 94 IPR000504 GO:0003723
Spst4g02075 266 SMART rrm1_1 26 99 IPR000504 GO:0003723
Spst4g02075 266 SUPERFAMILY RNA-binding domain, RBD 24 177 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02075 Spst-Chr4 61564887 61566485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02075 21 166 C2H2 Transcription Factor Family AT2G19380 30.519 1.28e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02075 - - vra:106778170 464.151