Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02073 ATGGTCTCTATCATACTTCCCTTATTCTTCTTGTCCTTGTTTGTTGTTCAAGTTTCCTCTTGTAGCCAGATTGATAAGCTCTCCCTCTTGGCCTTCTCTGGGAACATATCCACCTCTCCACCCTTTCCTTCTCTCAATTGGTCTGATTCTCTCGATTGTTGTAGTTGGGAAGGCATTACTTGTGATGGGGATCTGAGAGTTACACATCTTCTGCTACCTTCTAGAGGACTAACTGGCTTCATCTCCCCCTCTCTCACAAACCTCTCTTCTCTCTCTCACCTTAATCTCTCCCATAATAGGTTATCTGGTAGTCTCCAGCATCAATTTTTCTCATTACTCAATCACTTGCTGGTTCTTGATTTGAGCTACAATCATCTATCTGGTGAATTGCCACCTTTTGTTGGTGATAAAAGTGGCAAAAATAGTAGTGGTGGTGTTATCCAGGAGCTGGATTTGTCCAGTAACTTTTTCAATGGGATACTTCCAAATTCTTTGCTTGAGAACCTGGCAGCTGCAGCAGCTGGAGGGAGTTTGGTGTCTTTGAATGTTAGTAATAACAGCTTCATAGGTCATATTCCCACTTCTCTCTTTTGCATTAATGACCATAACTCCTCCTCTCTCAGATTCTTGGATTATTCATCCAATGATTTTGATGGTGCCATTCAACCTGGACTTGGAGCATGCTCCAAGCTGGAGAAATTTAGAGCAGGTTTCAATTTTCTGTCAGGGCCTATCCCAAGTGATCTTTTTTATGCTATTTCTCTCACAGAAATCTCATTGCCCTTCAATAAACTCACTGGAACTCTTGGCGATGGTATTGTTGGACTTACCAACCTCACAGTTTTGGAGCTCTACTCCAATCATTTCACAGGTTTAATCCCCCATGATATTGGTAAACTCTCCAAGTTGGAAAGGCTACTCCTTCATGTCAACAATTTGACAGGTACTATGCCCCCATCTCTGATGAACTGTGTCAATCTTGAGGAGTTGAATTTAAGGGTCAACCTCTTGGAGGGAAATCTCTCTGCATTCAATTTCTCAGGATTCCTTAGCCTTACTACACTTGATCTTGGCAACAATTATTTTACCGGTGTTTTACCACCAACCCTTTTTGCATGCAAGTCACTTTCAGCTGTGAGGTTTGCATCTAATCAGCTTGAGGGAGAGATTTCACCCAAGATACTTGAACTAGAGTCTTTATCTTTCCTATCAATTTCTACTAATAAGTTGAGGAATGTTACTGGGGCTCTGAGAATACTCAGGGGGCTCAAGAACCTTAGTACTCTTATGCTCTCCAAGAATTTTTTCAATGAAATGATACCACAAGATGTGAACATAATAGAGCCAGATGGATTTCAAAAACTGCAGGTTTTAGGATTTGGTGGTTGTAATTTCACAGGTCAAATACCAGGCTGGCTTGTGAAACTTAAGAAGCTTGAGGCCCTGGACCTGTCCTTCAATCAAATTAGTGGTCCAACTCCTCCTTGGTTGGGTACACTTCCTCAACTTTTCTACATGGACTTGTCTGTTAACCTCCTTACGGGAGCATTTCCAGTAGAGCTCACAGAACTCCCAGCACTGACATCACAACAGGCAAATGATAAAGTGGAAAGGACTTACTTTGAGTTACCTGTCTTTGCTAATGCAAACAATGTTTCTCTGTTGCAATATAACCAGCTTTCAGCCCTACCTCCAGCAATATATCTAGGAAGCAATCACCTTAATGGCAGTATCCCTATTGAGATTGGGAAACTCAAAGTCCTTCATCAGCTGGACCTGAAAAATAACACCTTCTCTGGTGATATACCAGTTCAGTTATCAAACTTGACTAACTTAGAGAAACTAGACCTCTCAGGAAACCAGCTATCTGGTGAAATTCCTGATTCCCTTAGAAATTTACATTTCTTGTCTTTTTTCAGTGTAGCATTCAATAATCTTCAAGGACAGATACCAACTGGCGGTCAATTTGATACTTTCTCCTATTCCAGCTTCGAAGGAAACGCACAATTGTGCGGTCGAGCCATTCAGCGCTCTTGTCCTCAACAAAATACTACGAATACTAGTGCAGTTAGTCGCAGTTCAAACAAAAAAGTAATGATTGCACTTCTCATTACCGTCAGTTTTGGCTTTGGTTCCTTGATAACAGTGTTGACTCTGTGGATACTATCCAAGAGAAGGGTCAAGCCAGGACGAGAGCCTAACAAGATTGAAATGGAATCAATTTCTCCCTACTCCAACAGTGGAATTCATCCTGAAGGTGGTAAGGAGGCTAGCCTAGTGGTATTGTTTCCCAACAAGAATAATGAAACCAAGGACCTTACCATATTTGACATCCTAAAAGCCACTGAAAATTTCAGTCAAGCAAACATAATAGGATGCGGGGGCTTTGGTTTGGTTTATAAAGCAACATTACCAAATGGAACTACACTGGCCATCAAGAAACTTTCAGGAGACTTGGGCCTCATGGAAAGGGAATTCAAAGCCGAAGTAGAGGCTTTGTCAACAGCACAACATGAAAATCTGGTGGCATTGCAAGGCTATTGTGTGCATGATGGATTCCGGCTTCTCATGTATACGTACATGGAAAATGGAAGCCTCGATTGTTGGTTACATGAAAAACCTGATGGTCCATCGCAACTTGATTGGCCAACTCGCTTGAAGATTGCACAAGGAGCAAGCTGTGGTTTGGCTTATTTGCATCAGATATGTGACCCACACATCGTGCATCGCGATATCAAGTCAAGCAACATACTCCTTAATGAAAATTTTGAGGCACATGTTGCTGATTTTGGGTTGTCTAGATTGATTCTTCCATATCATACTCATGTTACCACTGAACTTGTTGGTACATTAGGCTACATTCCCCCAGAGTATGGACAAGCATGGGTGGCTACTCTGAGAGGAGATGTGTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTGACAGGGAGGAGGCCTGTAGATGTTTGCAAGCCAAAAATGTCAAGCGAGTTGGTTGGCTGGGTTCAACAAATGAGAATCGAAGGAAAGCAAGATCAAGTATTTGAACCTCTTCTGAGAGGGAAGGGGTTTGAAGGAGAGATGCTGAAGGTACTGGATGTGGCTTGCATGTGTGTCAGCCACAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTGAAGAATGTAGGATCAGACAACAAGCCAACACAGAAATAA 3207 0.4222 MVSIILPLFFLSLFVVQVSSCSQIDKLSLLAFSGNISTSPPFPSLNWSDSLDCCSWEGITCDGDLRVTHLLLPSRGLTGFISPSLTNLSSLSHLNLSHNRLSGSLQHQFFSLLNHLLVLDLSYNHLSGELPPFVGDKSGKNSSGGVIQELDLSSNFFNGILPNSLLENLAAAAAGGSLVSLNVSNNSFIGHIPTSLFCINDHNSSSLRFLDYSSNDFDGAIQPGLGACSKLEKFRAGFNFLSGPIPSDLFYAISLTEISLPFNKLTGTLGDGIVGLTNLTVLELYSNHFTGLIPHDIGKLSKLERLLLHVNNLTGTMPPSLMNCVNLEELNLRVNLLEGNLSAFNFSGFLSLTTLDLGNNYFTGVLPPTLFACKSLSAVRFASNQLEGEISPKILELESLSFLSISTNKLRNVTGALRILRGLKNLSTLMLSKNFFNEMIPQDVNIIEPDGFQKLQVLGFGGCNFTGQIPGWLVKLKKLEALDLSFNQISGPTPPWLGTLPQLFYMDLSVNLLTGAFPVELTELPALTSQQANDKVERTYFELPVFANANNVSLLQYNQLSALPPAIYLGSNHLNGSIPIEIGKLKVLHQLDLKNNTFSGDIPVQLSNLTNLEKLDLSGNQLSGEIPDSLRNLHFLSFFSVAFNNLQGQIPTGGQFDTFSYSSFEGNAQLCGRAIQRSCPQQNTTNTSAVSRSSNKKVMIALLITVSFGFGSLITVLTLWILSKRRVKPGREPNKIEMESISPYSNSGIHPEGGKEASLVVLFPNKNNETKDLTIFDILKATENFSQANIIGCGGFGLVYKATLPNGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHDGFRLLMYTYMENGSLDCWLHEKPDGPSQLDWPTRLKIAQGASCGLAYLHQICDPHIVHRDIKSSNILLNENFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVCKPKMSSELVGWVQQMRIEGKQDQVFEPLLRGKGFEGEMLKVLDVACMCVSHNPFKRPSIREVVEWLKNVGSDNKPTQK 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02073 1068 SMART serkin_6 785 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02073 1068 Gene3D Ribonuclease Inhibitor 250 344 IPR032675 -
Spst4g02073 1068 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 274 1057 - -
Spst4g02073 1068 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 246 341 - -
Spst4g02073 1068 Gene3D Ribonuclease Inhibitor 24 145 IPR032675 -
Spst4g02073 1068 FunFam Leucine-rich repeat receptor protein kinase MSP1 755 860 - -
Spst4g02073 1068 PRINTS Leucine-rich repeat signature 91 104 - -
Spst4g02073 1068 PRINTS Leucine-rich repeat signature 609 622 - -
Spst4g02073 1068 SUPERFAMILY Protein kinase-like (PK-like) 771 1056 IPR011009 -
Spst4g02073 1068 FunFam Tyrosine-sulfated glycopeptide receptor 1 346 684 - -
Spst4g02073 1068 ProSiteProfiles Leucine-rich repeat profile. 611 633 IPR001611 GO:0005515
Spst4g02073 1068 FunFam Leucine-rich repeat receptor-like protein kinase 861 1067 - -
Spst4g02073 1068 SUPERFAMILY L domain-like 452 686 - -
Spst4g02073 1068 Gene3D Transferase(Phosphotransferase) domain 1 861 1068 - -
Spst4g02073 1068 ProSiteProfiles Protein kinase domain profile. 785 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02073 1068 Pfam Leucine Rich Repeat 611 633 IPR001611 GO:0005515
Spst4g02073 1068 Pfam Leucine Rich Repeat 148 166 IPR001611 GO:0005515
Spst4g02073 1068 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Spst4g02073 1068 Pfam Leucine Rich repeat 477 491 IPR001611 GO:0005515
Spst4g02073 1068 Pfam Leucine Rich repeat 114 129 IPR001611 GO:0005515
Spst4g02073 1068 Gene3D Ribonuclease Inhibitor 345 688 IPR032675 -
Spst4g02073 1068 SUPERFAMILY L domain-like 20 267 - -
Spst4g02073 1068 SMART LRR_typ_2 113 137 IPR003591 -
Spst4g02073 1068 SMART LRR_typ_2 276 299 IPR003591 -
Spst4g02073 1068 SMART LRR_typ_2 349 373 IPR003591 -
Spst4g02073 1068 SMART LRR_typ_2 476 506 IPR003591 -
Spst4g02073 1068 SMART LRR_typ_2 609 633 IPR003591 -
Spst4g02073 1068 SMART LRR_typ_2 88 112 IPR003591 -
Spst4g02073 1068 SMART LRR_typ_2 300 324 IPR003591 -
Spst4g02073 1068 SMART LRR_typ_2 397 419 IPR003591 -
Spst4g02073 1068 ProSitePatterns Protein kinases ATP-binding region signature. 791 814 IPR017441 GO:0005524
Spst4g02073 1068 Pfam Protein tyrosine and serine/threonine kinase 788 1054 IPR001245 GO:0004672|GO:0006468
Spst4g02073 1068 SUPERFAMILY L domain-like 198 531 - -
Spst4g02073 1068 FunFam Receptor-like protein 2 23 143 - -
Spst4g02073 1068 CDD STKc_IRAK 791 1058 - -
Spst4g02073 1068 Pfam Leucine rich repeat 254 313 IPR001611 GO:0005515
Spst4g02073 1068 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672|GO:0006468
Spst4g02073 1068 Gene3D Phosphorylase Kinase; domain 1 754 860 - -
Spst4g02073 1068 Gene3D Ribonuclease Inhibitor 146 249 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02073 Spst-Chr4 61528101 61531307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02073 5 716 Miscellaneous Gene Families AT1G17240 50.904 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Spst4g02073 Pkinase 6.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02073 - - gmx:100781943 1864.35