Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02065 ATGGAGAACATAATTTCCACACTTGATCACGTGCCTGTGGGATTCAGGTTTCGTCCCACAGATGAGGAGCTTGTCAGCTATTACCTCAAACACAAGCTGCTTGGAGATGATTTCCCTGTCCATGTCATTCCAGAGATCGACCTTTGCAGAGTGGAACCTTGGGACGTACCAGCAAAATCAGTGATCAAATCCGATGACCCGGAGTGGTTTTTCTTCAGTTCTGTGGATTACAAGTATTCCAAAAGTACAAGGGTCAACAGGACTACCAAGCATGGCTTCTGGAAATCCACTGGAAATGACCGTAACATTAGGACTAGAGGCACCAACAATGTCATTGGGACAAAGAAGACTCTCGTTTTCCACGAAGGTCGTGTTCCCCGTGGTGCCAAGACCAATTGGGTTATTCATGAATATCGTGCCCTTACCTCCCATGAAAGCCAGAATACTTTGGTTTTATGCCGCTTGATGAAGAAAGCTGACAAAAGAAAAGAAGGGGGAATTGAGGCACCAAATTTTCTTGATGAAATTAGCTTACCTGAATTTACATTGGAAGAAATCTTGAAGGCAGCGGAACTCTTCCCCCCAGTAGAACAGTATGATGATGATGATGAGTTCGTAAATTCAATTTTTGTTGATAATGAAGAGGTTATTATCAATGAAGAAAGAAGACACTGTTTTGTCAATAGTTCCACCCAACCAAAGTCATTGAGAAGGGTATACAATGCAAGCAGTGACACAGATGCTGAAGTTGTCTCTAATCTGGTAAAGGTAAATTGTCCAAAGTCCAAATGA 792 0.4242 MENIISTLDHVPVGFRFRPTDEELVSYYLKHKLLGDDFPVHVIPEIDLCRVEPWDVPAKSVIKSDDPEWFFFSSVDYKYSKSTRVNRTTKHGFWKSTGNDRNIRTRGTNNVIGTKKTLVFHEGRVPRGAKTNWVIHEYRALTSHESQNTLVLCRLMKKADKRKEGGIEAPNFLDEISLPEFTLEEILKAAELFPPVEQYDDDDEFVNSIFVDNEEVIINEERRHCFVNSSTQPKSLRRVYNASSDTDAEVVSNLVKVNCPKSK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02065 263 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Spst4g02065 263 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Spst4g02065 263 SUPERFAMILY NAC domain 8 158 IPR036093 GO:0003677|GO:0006355
Spst4g02065 263 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Spst4g02065 263 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02065 Spst-Chr4 61481455 61483175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02065 7 165 NAC Transcription Factor Family AT4G35580 53.049 1.76e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst4g02065 NAM 7.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02065 - - ccaj:109788497 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02065 4 61481455 61483175 Spst4g02065 4 61481455 61483175 ECH