Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02064 ATGGAACTTGACAACGTTAGTTCTGGTGAATATTCTGTCCATGTTGGCATGAGTAGTCTAGCTTCTAACCATGAAGCAAACATAGAGAAAAAGGAGAGTATCATTCAAGAAGATTTCTGGGCAGTGGAGACATCCTCTTGTGACTCGACTGCAGATGAACCTGCTGAAATTTCTTGCTCTTCTTCCACCCAAACACAGAGGAAGGTTTCAAACAATGCAGTATCCCATGTTGAGGGTCGGAAGGAATTTGCCACTATGAAATCAGAGAACCAGAAAAATGCTCAAAATACTTGTTCCAAAGGGATCCTCAAAATCAGAAGCCAGCAATCAAGTACAGGTAATGTGTTGGAAGGGCCGAGGAGGAGTGCCATGATTCCTTTTCATACAGTTCAGTTACATGGCAAGGTTATTATAAGATCTGTAAGGTGTTTCCGTCCTTCAGAAGACGAACTTGTCGACTACTACCTCAAACACAAGTTGCTCGGTGATGATTCCCGTGTCCACCTCATCCCTGTTATTGATCTCTGCGATGTGGAACCTTCGGATGTACCAGTGATGCTTGCAAGATCACATATACGATTTGGTGACCCAGACTGGTTTTTCTTCAGTCCTGTTGATTTCAAGTATTCAAACAGTAAAAGGGTTAACAGGAAAACCAAGTGTGGCTTCTGGAAAGCCACTGGAAAAGACCGTGACATTAGGAGCTGGGACACCAACACTCGCATTGCCACAAAGAAGACTCTTGTTTACTATAAAGGCAGTGTTTCCTCTGGTGTCAAGTCCTACTGGGTTATTCACGAATATCATGCTGTTACCTTTCATGAAAGCAAGAGGACTTTTGTTTTATGCCGTTTGATGAAGAAACCTAGGAAAATAATTGAAGGGGGAACTAATGCACTAATCTGTGATGAAGGAGAACCCAGTAAACTCAAGGTTCCTGACTACGAAAATAAGGCAACAACAGAAGGAATTTCATCTGGAGGTACTTTTACCGGGGTGGAAACAATCTCTCAGGCTACGCAGCAGGCAGAGACATTCATCTCCTCAATACAACAGTCTCCAGCTGGTATTGAGCAGGAAGAAGCATCTTTTGCAAACTATCCAATTGACGATGCCTATTTTAAAAATGAAGATAACTTCATTCAAATTCCATCAGAAATTACGGCTGAAGATGAATTCTTAAATTCACTTTTAGCCGATGAAAATAATATATTTACTTCTATTTATAACACCACTCAACCAAAATTATTTAAAAGAATATTTTATGAAGATAGTGATCCAGATGTCACCAAAGACATGTCCACACAGGATGATAATACTGGGGATATTTTAGGATGGAGTAATAAATATTCTATTTCACACGGATACCATTCATCAAAAAGGTTGAAATCTTCACAAGATGTAGTTGATGACATATGTTTTTCATCGTCTGATTGGGAGACAAACCAAGAAATAAAAGAGAGTATGTTAGGAGACGAATTCTCGGGAATGGAGTCATCCTATTGTGACTCAACTGCAGATTAG 1524 0.4009 MELDNVSSGEYSVHVGMSSLASNHEANIEKKESIIQEDFWAVETSSCDSTADEPAEISCSSSTQTQRKVSNNAVSHVEGRKEFATMKSENQKNAQNTCSKGILKIRSQQSSTGNVLEGPRRSAMIPFHTVQLHGKVIIRSVRCFRPSEDELVDYYLKHKLLGDDSRVHLIPVIDLCDVEPSDVPVMLARSHIRFGDPDWFFFSPVDFKYSNSKRVNRKTKCGFWKATGKDRDIRSWDTNTRIATKKTLVYYKGSVSSGVKSYWVIHEYHAVTFHESKRTFVLCRLMKKPRKIIEGGTNALICDEGEPSKLKVPDYENKATTEGISSGGTFTGVETISQATQQAETFISSIQQSPAGIEQEEASFANYPIDDAYFKNEDNFIQIPSEITAEDEFLNSLLADENNIFTSIYNTTQPKLFKRIFYEDSDPDVTKDMSTQDDNTGDILGWSNKYSISHGYHSSKRLKSSQDVVDDICFSSSDWETNQEIKESMLGDEFSGMESSYCDSTAD 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02064 507 MobiDBLite consensus disorder prediction 53 74 - -
Spst4g02064 507 Pfam No apical meristem (NAM) protein 144 269 IPR003441 GO:0003677|GO:0006355
Spst4g02064 507 MobiDBLite consensus disorder prediction 53 73 - -
Spst4g02064 507 ProSiteProfiles NAC domain profile. 138 288 IPR003441 GO:0003677|GO:0006355
Spst4g02064 507 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 139 395 - -
Spst4g02064 507 Gene3D NAC domain 147 293 IPR036093 GO:0003677|GO:0006355
Spst4g02064 507 SUPERFAMILY NAC domain 143 288 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02064 Spst-Chr4 61465123 61471258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02064 144 295 NAC Transcription Factor Family AT4G35580 45.223 4.52e-38 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst4g02064 NAM 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02064 - - gsj:114419327 519.235