Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02062 ATGGAGATTATAGGATTCGGTTTCCGTCCCACAGAAGAAGAACTTGTCGACTATTATCTCAAACATAGGTTGATCGGTGATGATCCACGCGTCCACCTCATCCCCGACATTGACCTTTGTGAAGTGGAACCTTGGGACGTACCAATGTTATTAGCGGAATCAGCTGTACATTTCAATCTCCCAGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTATTCAAATAGTAAAAGGGTTAACAGGACAACCAAGTGTGGCTTCTGGAAACCCACTGGAAAAGATCGTGACATTAGGAGCTTGGACACCAACACTCTCCTTGCCACAAAGAAGACTCTTGTTTACTATAAAGGTCGTATTTCCCGTGGTGTCAAGTCCAACTGGGTTATTCATGAGTACCATGCTGTTACCTTTCATGAAAGTCAGTGTAACTATTTTGTTGTGAATAGAATTGTTCAGGGAATAAGTTTCAGATTTGGAAGCATTAACCTGACTAGTCTTGGCCTTTCATTTGTGCGAATCATATCAAATATGCTGATTATCATCTTGCAGAGGACTTTTGTTTTATGTCGCCTGATGAAGAAACCTGAGAAAACAACTGAAAATGGAAGTGATGCACTGACATGTGATGAAGGGGAGCCCAGTAGAATCATGGTTTCTGGCTATGAAAATCAGGCAATAGCAGAAGGAATTCCATCAGGAGGTACTTTTAATGGAATAGAGACTACCTTTCAGCCTATGCATCAAGCAGAGAATTACTTCTTCTCCCCACTACAACAGTCTCCAATTGGTATTGAGCAAGAAGAAGCGTCTTTTCCAAACTCCCCATTTTACAATGCCCATTTTAGAAATGAAAAGAAGACTATACAGATTCCATTTGAAACTACACAGGAAGATGAATTCTTGAATTCCATTTTAGTGGACGATAATTTTGATAACAATGAAGAAAGTATACAGACCTATCTCAATAGTTCCACCCAATCGGAGTCGTTTAGAAAAGTATACTGTGAAAGTAGTGATACGGATTCTGAAGCGGTCTCTCAACTGCAAAAGATATATTGTCCAAATATTCAATAA 1074 0.3948 MEIIGFGFRPTEEELVDYYLKHRLIGDDPRVHLIPDIDLCEVEPWDVPMLLAESAVHFNLPEWFFFSPVDFKYSNSKRVNRTTKCGFWKPTGKDRDIRSLDTNTLLATKKTLVYYKGRISRGVKSNWVIHEYHAVTFHESQCNYFVVNRIVQGISFRFGSINLTSLGLSFVRIISNMLIIILQRTFVLCRLMKKPEKTTENGSDALTCDEGEPSRIMVSGYENQAIAEGIPSGGTFNGIETTFQPMHQAENYFFSPLQQSPIGIEQEEASFPNSPFYNAHFRNEKKTIQIPFETTQEDEFLNSILVDDNFDNNEESIQTYLNSSTQSESFRKVYCESSDTDSEAVSQLQKIYCPNIQ 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02062 357 Pfam No apical meristem (NAM) protein 5 133 IPR003441 GO:0003677|GO:0006355
Spst4g02062 357 ProSiteProfiles NAC domain profile. 2 153 IPR003441 GO:0003677|GO:0006355
Spst4g02062 357 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 209 - -
Spst4g02062 357 SUPERFAMILY NAC domain 4 151 IPR036093 GO:0003677|GO:0006355
Spst4g02062 357 Gene3D NAC domain 11 199 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02062 Spst-Chr4 61461228 61462930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02062 4 196 NAC Transcription Factor Family AT4G35580 40.933 2.41e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst4g02062 NAM 2.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02062 - - gmx:100779816 459.914