Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02061 ATGAAGATTGTAGGAGTCGGTTTCCGGCCCAAAGACGAAGAACTTGTCGACTTTTACCTCAAACACAAGCTGCTGGGTGATGATCCCAGTGTCCTCGTCATGCCTGACATTGAACTTTGTGATGTGGAACCGTGGGAAGTACCAGCGATGCTGGAAAAATCAGTATTACGATTCGGCGACCCAGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTATTCAAATAGTAAAAGGGTTAACAGGACAACCAAGTGTGGCTTCTGGAAACCCACTGGAAATGACCGTGACGTTAAGGGCTGGGACACTACCACTGTCATTGGGAGTAAGAAGACTCTTGTTTTCCACCAAGGTCGTGCTTCCAAAGGTGTTAAGACCAACTGGGTTATTCACGAATACCATGCTTCTACCTTAAATGAAAACCAGAGGACTTTTGTTTTATGCCGCTTGATAAAGAAACCTGGGAACACTACTGAAGGTGGAACTGATGCACTGATAAGTGAGAAAGGAGAATCCAGTATAAGCATGGTTTCTAACTATGAAAATCAGGGAGTTGCTTATACAGGAATGAAAACGATCTTTCCAGAAACTGATCAATCAGATACATGCTTCCCCTCCAGACAACAGTCTCTAATTGGTATTGATGAGCAAGAGGAAACTTTTTATCCAAATTATCCTTTAATCAATGTCTATTTTAGAAATGAAAACATAAATCAGATTTTATATCAACAAAAAGAGATGATTTCTCAACAAAAAGAGATGGTTTCTCAACAAAAAGAGATGGTTTCTCAACAAACAGAGATGGTTTCTCAACAAACAGAGATGGTTTCTCAACAAACAGAGATGGTTTCTCAACAAACAGAGATGGTTTCTCAACAAACAGATATGGTTTCTCAACAAACAAAGATGGTTATTCCATCTCAACAAACAGAGATTGATTCTCAACAAACAGAGATTGTTTCTCAACCAATGCATATTTCTTTTGAATCTATAATTTCAGAGGAAGATGAGTTCTTCACATCAATTTTAACTATTGATGAAGAAATTACTCAGGATCCATTTCAACCACTGCATATTTCTCTTGAATCTATAGTTTCAAAGGAAGATGAGTTCCTCACATCAATTTTAAGTTTTGATGAAGAAATTACTCAAATTCCAGACAGAGAAATTACTCAGATTTCATCGGAACCAATACAGTTTCCATCGGAACCAATATATTGTGAAGACTACAATTATCCAGATGCAAAAGTCATCTTTAAAGACTACAAGATTGAAGATATTTCAATTATGTATGATGAATATTCTAATTTGAATAATTATCATGCATCAAAAAGATTTAAAACATAA 1344 0.3653 MKIVGVGFRPKDEELVDFYLKHKLLGDDPSVLVMPDIELCDVEPWEVPAMLEKSVLRFGDPEWFFFSPVDFKYSNSKRVNRTTKCGFWKPTGNDRDVKGWDTTTVIGSKKTLVFHQGRASKGVKTNWVIHEYHASTLNENQRTFVLCRLIKKPGNTTEGGTDALISEKGESSISMVSNYENQGVAYTGMKTIFPETDQSDTCFPSRQQSLIGIDEQEETFYPNYPLINVYFRNENINQILYQQKEMISQQKEMVSQQKEMVSQQTEMVSQQTEMVSQQTEMVSQQTEMVSQQTDMVSQQTKMVIPSQQTEIDSQQTEIVSQPMHISFESIISEEDEFFTSILTIDEEITQDPFQPLHISLESIVSKEDEFLTSILSFDEEITQIPDREITQISSEPIQFPSEPIYCEDYNYPDAKVIFKDYKIEDISIMYDEYSNLNNYHASKRFKT 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02061 447 Pfam No apical meristem (NAM) protein 4 133 IPR003441 GO:0003677|GO:0006355
Spst4g02061 447 ProSiteProfiles NAC domain profile. 2 152 IPR003441 GO:0003677|GO:0006355
Spst4g02061 447 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 267 - -
Spst4g02061 447 SUPERFAMILY NAC domain 4 152 IPR036093 GO:0003677|GO:0006355
Spst4g02061 447 Gene3D NAC domain 11 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02061 Spst-Chr4 61448269 61450564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02061 4 159 NAC Transcription Factor Family AT4G35580 49.068 1.58e-46 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst4g02061 NAM 6.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02061 - - vun:114167597 340.887