Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02058 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCTGATAGCAGAGAGGAGGAGGAGGAAGAGGAAGCAGCAGAAGAAATCATCACAAGAGAAGAAAGCAGCAGTAAGCATCACTACCCCTTTTCTTCTCCCTCTTTGTCTTTATCTTCTGCTCCTTCAATATCAAATTATACTTCTACTACTACTGCTGCACGTCCTCATCACCATCATCATCCAATAAATATTCCTCACCAACAAAATCCATGGCTGGGGATGAATATTCATGATCATGATCATCATCTTCAGTCACCAGAGACCACTGAATCTCACAATTCATCATCTGGGTTAGGGTTGTTACACCAGCACCAGGATGCAGCAGGTTCCAATTTCATCATCAGCAATCATCATCATCATCACACAACAAAGCAGCTGGACTTCATGGACTTGACACTGGGGAGCAGCAAGGATGAAGGGAATTTGCTAGGATCAGGAGGTGTTGCTTCTTCCGTGTATGCTCATCATGCAAGTGGTAGTTCTTCTGCCAATGGTAACATTAACAACCTGCAGCAGCCTTCTGAGAAGGAGCACATGTTTGATAAAGTTGTGACACCAAGTGATGTGGGGAAGCTGAACCGGTTGGTGATACCAAAACAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGGCTGTTGCTCAATTTTGAGGACAGGAATGGCAAGTTGTGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCCAGCGTGGTGTTGGGGAATTGTACAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCACCATCACCATCATGGCCCTGACCCTTCAACCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCACTTAATGTCCATCAGATGGGGTGCCACTGGCAGATTGTACTCCCTCCCCTCCCCAACTCCACCACGCCACCATGACCATTTGCAACAACACCTCAATTACAACACCGTGTATCATCAACATCATCATCCCTTTCATCACCAAGGTGGTGGTGGAAATGGAACTCATCACTACAATTATCATGACATGAGTACTTCAGGATCTGGCTCAGTCTATTACCTCAGGTCAACACCCCCACCAATGCCATTGGCTGATCACCAAACCTTGAACACAAGGCAACAACAAGATGCAGGCAATGTTTCTCACCCCCCTATAATCATTGATTCTGTTCCTGTTGCTCACCACCATCATCATCACCACCACCACCATGGTGGCAAGAGTGGTTCTAGTACTAGTACTAGTCCTAGCACTGCAGGCAAAAGACTTAGGTTGTTTGGGGTGAACATGGAATGTGCTTCTTCAACATCAGAAGACCCCAACTGCTTCAGCTTATTGTCCTCATCTTCAATGGCACACGTGACAAAGGCTAATTCCAATTCACCTCCCTCTTCTTCACTACCACCTCTTCAGCTTTTGAGGGAAGACTCACTTTCATCACCATCATCAGCAAGGTTTGGGGATCAGAGAGGTGAACCTTCAATGCTTTTTGATCTGGACCCTTCTTTGCAATACCGGCAGTGA 1638 0.4628 MELMQEVKGYSDSREEEEEEEAAEEIITREESSSKHHYPFSSPSLSLSSAPSISNYTSTTTAARPHHHHHPINIPHQQNPWLGMNIHDHDHHLQSPETTESHNSSSGLGLLHQHQDAAGSNFIISNHHHHHTTKQLDFMDLTLGSSKDEGNLLGSGGVASSVYAHHASGSSSANGNINNLQQPSEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPDHHHHHGPDPSTTLFTPFFLPNQPHLMSIRWGATGRLYSLPSPTPPRHHDHLQQHLNYNTVYHQHHHPFHHQGGGGNGTHHYNYHDMSTSGSGSVYYLRSTPPPMPLADHQTLNTRQQQDAGNVSHPPIIIDSVPVAHHHHHHHHHHGGKSGSSTSTSPSTAGKRLRLFGVNMECASSTSEDPNCFSLLSSSSMAHVTKANSNSPPSSSLPPLQLLREDSLSSPSSARFGDQRGEPSMLFDLDPSLQYRQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02058 545 MobiDBLite consensus disorder prediction 167 184 - -
Spst4g02058 545 FunFam B3 domain-containing protein 183 303 - -
Spst4g02058 545 MobiDBLite consensus disorder prediction 492 545 - -
Spst4g02058 545 MobiDBLite consensus disorder prediction 377 392 - -
Spst4g02058 545 Gene3D - 184 302 IPR015300 -
Spst4g02058 545 MobiDBLite consensus disorder prediction 360 457 - -
Spst4g02058 545 SMART B3_2 190 295 IPR003340 GO:0003677
Spst4g02058 545 CDD B3_DNA 188 277 IPR003340 GO:0003677
Spst4g02058 545 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 485 IPR044800 GO:0003700
Spst4g02058 545 MobiDBLite consensus disorder prediction 37 62 - -
Spst4g02058 545 MobiDBLite consensus disorder prediction 402 419 - -
Spst4g02058 545 SUPERFAMILY DNA-binding pseudobarrel domain 186 291 IPR015300 -
Spst4g02058 545 MobiDBLite consensus disorder prediction 1 109 - -
Spst4g02058 545 Pfam B3 DNA binding domain 190 294 IPR003340 GO:0003677
Spst4g02058 545 MobiDBLite consensus disorder prediction 492 525 - -
Spst4g02058 545 MobiDBLite consensus disorder prediction 167 188 - -
Spst4g02058 545 ProSiteProfiles B3 DNA-binding domain profile. 190 295 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02058 Spst-Chr4 61434137 61435774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02058 181 473 RAV Transcription Factor Family AT2G46870 49.831 7.22e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst4g02058 B3 2.8e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02058 K09287 - gmx:100781424 687.567