Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02055 ATGTTCTTCTTCTTCGATGTCACGATTTCGTTCCGAGGTATTGGTTTTCCTTTTTTATTTTATTTCATTTGTTCTGTTTGGTTTCCGAGAAAACTGAACCGAACTGCTGCGAACGGATTTACTTCATCTGGATTTGGATGTAACAGGTGCTGTCAGTACTCACAGCGCGGCGCTGTTGAGTTGAATTTCGCTGGTTTTGAGTTGCTTTGTGATTATTTTTTCTCGGCAACCAAACAGGAGGAATCGAAATTTGCTGTGATTATTTCCCTCTCTTTTCCGCGTTTGAAAGGTTTTGGCGCTGTCGAATTTCTTTTGAGACGGATCTCTTCCTATTGTTCTCGCTTTGTTTCTTTTGCAGTAGCATCACCACAATACCTTCTTCAGAGTCTGCTCACTTTCACCACAACGGCTTTACTCTTCACTGTGTTTCGTGTCACCAACAATGAAAGGCGGTATTCCCTGTATCCACTCCTTGTCAGGGAAGATCTGAAGCAGCGAAAACCGTATACAATCACAAAGCAAAGGGAACGATGGACAGAGGAGGAGCATAATAGGTTTCTAGAAGCTTTGAAACTGCACGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCCGTTCAAATCAGGAGCCATGCACAGAAGTTTTTTACAAAGAGGTTCTATAACCATGTGGTTGGGAAGGTTTTGGGGATAATTGGTTCTTCTGAACGATGGCCCAAAAAAGTGAGATATGCATGTGCTGTGGTGAAGAAGCATGGTAACCTACAAGCACTTATAACAATACTTGCAGAGTTTGATTCAGTCATAAAGCAAGATAGAGTTATGTTTGGGCTTCCTGATAATTTGTGGCAACTTGCAATACCATCAATTAGAGGGGAAGGCTGCATACAATTGCCCTCCCCTATTCCTTCTCGAAGCGAGGAACATCCAACATTGGAGTATGCTAGTTTATTGGAGAAAGAGGCCCTTGTAAAGGGTGTTCCAATTGGACAAGCTCTTCATATCGATATTCCCCCTCCACGGCCTAAAAGAAAACCAAGCAATCCTTATCCTCGAAAGACCAGGATTGGTACCGCAACATTACATAGTGGAGCAAAGGATGGAAAACTCAATTTAGTTGAATCTTCACATGTCAACCAAGCACTGGACTTGGAAAAAGAACCACTTCCGGAGAAATATGATTTAGACGAAGGGCCAACAAAATCAAAGGAGAATAAGAATGAGAACTGCTCAGAATTATTTACAGTTGTCCAGGAGGTACCCTGTTCCTCTATATCTTCAGCAAACAAAAGTTCAATATCAATGGCAGTGCCGCTGGGACATTCATGCGCCTTTAAAGGGATTACAACTTCAGTGAAAGAGGTAATAGCTCGTGATGAAAAAACTGAATCATTTGTGACTGTTGAACTTGAAAATGGGAATTTGGAGATCAATGATGGAAAACAGACTAAAGGCACTAGTAAAAACTCCACGTTAGAGAATTTTGATGCTTTACAAATGAACTTGGTTCAAAATGAGAAAGCAGATGGTCTCGATTGTGCATTAACAGTGGATGGGATGCAAGGCAATCAGAATTACCCTAGACATGTTACTGTGCACGTTGTTGACGGGAACCTTGGAACAAGTACTCAAAATCCATCACAAGATATGTTGTTTCGAGACTCCATGTTTCAGCCAATAGGAGGGGTTAATGGGCAACCAAATCTTTTCACCAATTCAGCTCCATCGAACACAAGTGAAAGTCAAAATAACACTGCACGATCTTCTGTTCATCAATCATTTCCTCCTTATCCTCCCTTCACACAGCACAACCAAGATGATTACCAATCCTTTCTTCATATGTCTTCCACATTTTCGAATCTTATTGTCTCTACCTTGGTGCAAAACCCGGCAGCCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATCCAGAACCTTCTGCAGATTCTCCTAGGTGCTCCCAAGGAGGTTTTACATCTAGACAAATCGGTAGCCCTCCAAGCGTTGCAGCTATTGCAGCTGCTACTGTAGCTGCTGCAACAGCATGGTGGGCAGCTCATGGATTGCTTCCTTTGTGTGCTCCTCTTCATACTGCTTTTGCCTGTCCTCCTGCATCGGTGACGGCAGTCCCATCAATGAATACTGCTGAAGCACCAGCTCTAAAGGCGGAGCAAGAAAAGAGTACTCTACAAAATCCTCCTATGCAAGATGAGATTATGCTTCCAGAATACTCGGAAGCTCCACAAGCTCAACATTCAGCTTTAAAGTCACCAGCTGCCATTTCATCAGATTCTGAGAGTGGAGATGCCAAGTTAAATACTTCACCAAAGGCTACAGATCATGAGACGAACCAAAAAATTTCTGAGCACCTTGATTCCAACAAAACGAAAGGTAGAAAACAGGTTGACCGTTCCTCGTGTGGTTCCAACACAGCCTCAAGCAGCGATGTGGAAACTGATGCACTAGGGAAGGATGAGAAAGAGAAGGAAGAGCCTGAAACACCTGATGCTAACCATTTAGCCATTGAGTTTAGTAATCGTCGTAGAAGCATTTGCAACCTTACTGATTCTTGGAAAGAGGTCTCTGAAGAGGGGAGACTAGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCTCAAAGCTTTTCACCTCCTCATGCTTTGAAGAACAAGGATCACCAAATGAACATCATCAATGATAACAAGCAAAACATATATGACAAAAATGAAGACCTTGACAGCAAGAAATGCAGTTCTAATTGTAAAGCAATGCCGAAAAACCCGCCATTTGTAGAAGAAAATAACGAGGGACTGTTAACCATAGGGCTTGGACAAGGAAAGCTTAAGACTCGTCGAACAGGCTTCAAACCCTACAAAAGATGTTCCGTGGAGGCCAAGGAAAATAGGGTTGGAGCGACCAATCAAGGTGAAGAAAAAGGTTGTAAGAGAATACGTTTGGAAGGGGAGACTTCTACTTGA 3003 0.4296 MFFFFDVTISFRGIGFPFLFYFICSVWFPRKLNRTAANGFTSSGFGCNRCCQYSQRGAVELNFAGFELLCDYFFSATKQEESKFAVIISLSFPRLKGFGAVEFLLRRISSYCSRFVSFAVASPQYLLQSLLTFTTTALLFTVFRVTNNERRYSLYPLLVREDLKQRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKRFYNHVVGKVLGIIGSSERWPKKVRYACAVVKKHGNLQALITILAEFDSVIKQDRVMFGLPDNLWQLAIPSIRGEGCIQLPSPIPSRSEEHPTLEYASLLEKEALVKGVPIGQALHIDIPPPRPKRKPSNPYPRKTRIGTATLHSGAKDGKLNLVESSHVNQALDLEKEPLPEKYDLDEGPTKSKENKNENCSELFTVVQEVPCSSISSANKSSISMAVPLGHSCAFKGITTSVKEVIARDEKTESFVTVELENGNLEINDGKQTKGTSKNSTLENFDALQMNLVQNEKADGLDCALTVDGMQGNQNYPRHVTVHVVDGNLGTSTQNPSQDMLFRDSMFQPIGGVNGQPNLFTNSAPSNTSESQNNTARSSVHQSFPPYPPFTQHNQDDYQSFLHMSSTFSNLIVSTLVQNPAAHAAASFAATFWPYANPEPSADSPRCSQGGFTSRQIGSPPSVAAIAAATVAAATAWWAAHGLLPLCAPLHTAFACPPASVTAVPSMNTAEAPALKAEQEKSTLQNPPMQDEIMLPEYSEAPQAQHSALKSPAAISSDSESGDAKLNTSPKATDHETNQKISEHLDSNKTKGRKQVDRSSCGSNTASSSDVETDALGKDEKEKEEPETPDANHLAIEFSNRRRSICNLTDSWKEVSEEGRLAFQALFSREVLPQSFSPPHALKNKDHQMNIINDNKQNIYDKNEDLDSKKCSSNCKAMPKNPPFVEENNEGLLTIGLGQGKLKTRRTGFKPYKRCSVEAKENRVGATNQGEEKGCKRIRLEGETST 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02055 1000 SUPERFAMILY Homeodomain-like 169 222 IPR009057 -
Spst4g02055 1000 MobiDBLite consensus disorder prediction 811 826 - -
Spst4g02055 1000 Pfam Myb-like DNA-binding domain 175 218 IPR001005 -
Spst4g02055 1000 MobiDBLite consensus disorder prediction 758 789 - -
Spst4g02055 1000 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 224 IPR017930 -
Spst4g02055 1000 MobiDBLite consensus disorder prediction 755 848 - -
Spst4g02055 1000 MobiDBLite consensus disorder prediction 978 1000 - -
Spst4g02055 1000 MobiDBLite consensus disorder prediction 338 365 - -
Spst4g02055 1000 MobiDBLite consensus disorder prediction 572 604 - -
Spst4g02055 1000 ProSiteProfiles Myb-like domain profile. 170 220 IPR001005 -
Spst4g02055 1000 PANTHER SWI/SNF COMPLEX-RELATED 164 890 - -
Spst4g02055 1000 SMART sant 174 222 IPR001005 -
Spst4g02055 1000 CDD SANT 177 220 IPR001005 -
Spst4g02055 1000 ProSiteProfiles SANT domain profile. 173 224 IPR017884 -
Spst4g02055 1000 MobiDBLite consensus disorder prediction 827 845 - -
Spst4g02055 1000 MobiDBLite consensus disorder prediction 387 411 - -
Spst4g02055 1000 NCBIfam myb-like DNA-binding domain, SHAQKYF class 173 222 IPR006447 GO:0003677
Spst4g02055 1000 MobiDBLite consensus disorder prediction 790 810 - -
Spst4g02055 1000 FunFam protein REVEILLE 6 isoform X1 177 224 - -
Spst4g02055 1000 Gene3D - 177 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02055 Spst-Chr4 61378441 61388706 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst4g02055 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02055 K12133 - gmx:100101859 1120.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02055 4 61378441 61388706 Spst4g02055 4 61378441 61388706 ECH