Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst4g02052 | ATGGAAGAAGAAAAAAGCTTCACATATGCCATGCAGCTTGTGAACTCTAGTGTGCTATCCATGGCCATGTACTCAGCCATAGATCTTGGCATTTTTGATATCATGGCCAAAGCAGGTGTGGGTGGTAAACTATCTGCAATGGACATAGCAGCACAGCTTCCATGCAAGAATCCAGAAGCAGGCACAATGCTTGATCGAGTCCTAAGACTCCTTGCATGTCACTCAGTCATTGACTGCACAGTGGTTGATGATGAGCATGGTCCTCCTCCACATCTGAAGAGGCTCTATGGCATCAACTCTGTGTCCAAATACTTTGCTTCCATTCATGGTGCTGGCTCTCTAGGCCCTCTCATGCTGCTAGCTCAGGACCAGCTCTCCCTTCAAAGTTGGTATCATCTGAAAGATGCAATTCTGGAAGGAGGCATTCCATTCAACAGGGCCAATGGCAAACACGTCTTCGAGTATTCTGACTCGAACTCAAGCTTCAATAATCTTTTCATAGCAGCAATGGCCAACCGTGCAACTTTAATTATGAAGAAGATTGTGGAATCCTACAAGGGGTTTGAACTCATCAATAGCCTGGTTGATGTTGGTGGTGGTCATGGTGTCTCTCTTAACATAATAACTTCAAAATACCCTCACATTAAGGGTATCAATTTTGACTTGCCTCATGTCATAGAACATGCCTCTCCCTATCCTGGAGTGGAGCATGTGGGAGGAGATATGTTTGAAAGTGTGCCAAAAGCAAATGCCATTTTTATGATGTGTGTGCTTCATGATTGGAATGATGAGTGGTGCTTAAAGGTGTTGAAGAACTGCTATGATGCAATTCCTGGTGATGGAAAGGTGATTGTTGTGGATGGAATTCATCCATTTGAACCAAAGACAACAGCTGCAGCAAAGAGCATTTCCCAATATGATTTGGTGATGATGACTACAAGCCCAGGTGGGAAGGAGAGAAGTGAAGATGAATTCATGGCATTGGCAAAAGGAGCTGGATTCACTGGCATTAGATATACATGCTTTGTTTGTGACTTATGGGTTATGGAGTTCTTCAAGTAG | 1062 | 0.4379 | MEEEKSFTYAMQLVNSSVLSMAMYSAIDLGIFDIMAKAGVGGKLSAMDIAAQLPCKNPEAGTMLDRVLRLLACHSVIDCTVVDDEHGPPPHLKRLYGINSVSKYFASIHGAGSLGPLMLLAQDQLSLQSWYHLKDAILEGGIPFNRANGKHVFEYSDSNSSFNNLFIAAMANRATLIMKKIVESYKGFELINSLVDVGGGHGVSLNIITSKYPHIKGINFDLPHVIEHASPYPGVEHVGGDMFESVPKANAIFMMCVLHDWNDEWCLKVLKNCYDAIPGDGKVIVVDGIHPFEPKTTAAAKSISQYDLVMMTTSPGGKERSEDEFMALAKGAGFTGIRYTCFVCDLWVMEFFK | 353 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst4g02052 | 353 | Pfam | Dimerisation domain | 21 | 72 | IPR012967 | GO:0046983 | |
| Spst4g02052 | 353 | FunFam | Caffeic acid O-methyltransferase | 106 | 353 | - | - | |
| Spst4g02052 | 353 | PANTHER | O-METHYLTRANSFERASE | 10 | 338 | IPR016461 | GO:0008168 | |
| Spst4g02052 | 353 | Gene3D | Vaccinia Virus protein VP39 | 109 | 353 | IPR029063 | - | |
| Spst4g02052 | 353 | Gene3D | - | 1 | 105 | IPR036388 | - | |
| Spst4g02052 | 353 | FunFam | Caffeic acid 3-O-methyltransferase | 1 | 105 | - | - | |
| Spst4g02052 | 353 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 113 | 350 | IPR029063 | - | |
| Spst4g02052 | 353 | PIRSF | O-mtase | 1 | 353 | IPR016461 | GO:0008168 | |
| Spst4g02052 | 353 | Pfam | O-methyltransferase domain | 130 | 334 | IPR001077 | GO:0008171 | |
| Spst4g02052 | 353 | SUPERFAMILY | "Winged helix" DNA-binding domain | 2 | 106 | IPR036390 | - | |
| Spst4g02052 | 353 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 11 | 353 | IPR016461 | GO:0008168 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst4g02052 | Spst-Chr4 | 61336017 | 61338558 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst4g02052 | 3 | 353 | Monolignol Biosynthesis Gene Families | AT5G54160 | 50.142 | 9.52e-126 | 363 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst4g02052 | K13066 | - | gmx:100788873 | 604.749 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Spst4g02052 | 4 | 61336017 | 61338558 | Spst4g02052 | 4 | 61336017 | 61338558 | ECH |