Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02050 ATGGCTCCATCACTGGAAACCAATAACGGTGAAGCCATGCAACTTAAACACGTTGAAGAAGACCAAGATGGCATCCTCTTTGCCATGAACATGATGTCTTCTGTGGTGTACCCTCTTGCGGTTAAGACCGCGGTTGAGCTAGGGATCTTTGACATCTTGGGCAAAGCAGGTGAAAATGCGAAGCTCTCAGCAGAAGAGATTACAGAAAAAGTTGGCATAAAGAATCCAGAAGCACCAACTAAGGTGGATCGGATTCTGAGGCTTTTGGCTAGTCAATCCATGCTATCTTCATGTTTTGGTGAAGATGGCCAAAATTCTGGCAAGAGGCTCTACGGTCTCACCTATGCATCCAAGTATTTTGTTGCTGATGCTGATGGTGTCTCATTCGGAGCTACACTGAACTTGATTCTCGACAAGGTCTTCATGGATACCTGGACTGAAGTGAAAGGAGCCATCGTGGAAGGTGGTGTAGCATTCAACAGGGTTCATGGGATGCACGCATTTGAGTATGCAGCAGTGGATCCTAGGTTTAATGATGTTTTCAACAAAGCTATGTTCAACGTTACCACCATAGTCACCAATAGGGTTCTTGAGTTCTACCAAGGTTTCAAGAACATTCAAAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATCAATCTCAAGCTTATCACTTCTAAATATCCCAATGTTCAAGGTGTAAACTTTGACTTGCCACATGTCATAGAACATGCCCCTACTTACCCCGGTGTTGAACATGTAGCAGGAGATATGTTTGAGAGTGTTCCCAACGGAGACGCCATTTTTATGAAGTGGATACTTCACGATTGGAGTGATGAATACTGTTTGAAGTTGTTGAAGAATTGCCATAAAGCTCTTCCGAGTGATGGAAAAGTGATTGTTGTGGACTTGATTCTTCCCGATTTGCCGGAGAGTACAGTTACTGCCAGGAGTGGTTTCCAAGCTGACCTCTTGATGATGACTCAAAACCCAGGAGGGAAAGAGAGAACCCAAAATGAGTTCATGGAATTGGCCTTATCTTCTGGATTCAGTGGCATCACATTCGTTTGTTGTGTCTCTGGCTTCTGGGTTATGGAGTTTTTCAAGTAG 1107 0.4435 MAPSLETNNGEAMQLKHVEEDQDGILFAMNMMSSVVYPLAVKTAVELGIFDILGKAGENAKLSAEEITEKVGIKNPEAPTKVDRILRLLASQSMLSSCFGEDGQNSGKRLYGLTYASKYFVADADGVSFGATLNLILDKVFMDTWTEVKGAIVEGGVAFNRVHGMHAFEYAAVDPRFNDVFNKAMFNVTTIVTNRVLEFYQGFKNIQRLVDVGGGLGINLKLITSKYPNVQGVNFDLPHVIEHAPTYPGVEHVAGDMFESVPNGDAIFMKWILHDWSDEYCLKLLKNCHKALPSDGKVIVVDLILPDLPESTVTARSGFQADLLMMTQNPGGKERTQNEFMELALSSGFSGITFVCCVSGFWVMEFFK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02050 368 Pfam Dimerisation domain 40 90 IPR012967 GO:0046983
Spst4g02050 368 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
Spst4g02050 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 368 IPR016461 GO:0008168
Spst4g02050 368 FunFam Caffeic acid 3-O-methyltransferase 7 120 - -
Spst4g02050 368 Gene3D - 5 120 IPR036388 -
Spst4g02050 368 Gene3D Vaccinia Virus protein VP39 122 368 IPR029063 -
Spst4g02050 368 CDD AdoMet_MTases 208 305 - -
Spst4g02050 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 366 IPR029063 -
Spst4g02050 368 PANTHER O-METHYLTRANSFERASE 28 354 IPR016461 GO:0008168
Spst4g02050 368 SUPERFAMILY "Winged helix" DNA-binding domain 19 123 IPR036390 -
Spst4g02050 368 FunFam Caffeic acid O-methyltransferase 121 368 - -
Spst4g02050 368 PIRSF O-mtase 5 368 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02050 Spst-Chr4 61293418 61296018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02050 14 368 Monolignol Biosynthesis Gene Families AT5G54160 51.124 4.18e-134 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02050 K13066 - gmx:100789402 632.869