Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02048 ATGAGAGAGATAGACATAGAAAGATGGAGAGAGTCCCACAACTGCCTGTCCCCGCTGCTGGACAAAACTGCCACCGCCAATAATGCTTGGGACCTTAGGCCTAAGGTAGCAGCATTTAAGACCATATACTTTGATCACTGCTCAGCTTTGATGGAGAGGCTCCAAGGACCCCTCAATTCCTGTTTCTTTGGAGACCCCTTGGGAGTGAATTGTTTGGACCAAGTTCTGGTTGATGAAGAAAGCCTGAGACTGGAGGAGGAGGAGCAGCTTCTGATATCAAGTTTAGAGGACAAGATGCCATTCCTTCAAATGCTTCAGAGTGTGGAATCACCACAGTTTTTCCCTTTGAAAGAGCCAAACTTTCAAACACTTCTGAGGCTGCAGCACATGAAGAAACCATGGGAGGAAATGACCTATATTCCAAGAATGGAAGCACAAGTCCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACACGACATGTTGGAGATGCAGTCACCAGTGAAGTCAGAAAGCAATGACCTCCAACACCCACTTTCAATTTCGTGTTTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACCACACAAAGCATCACAATCATGCCCTAAATCTCAGCCAGCAGCCACAAGGGAAAGGAGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACAAGGAAGATGTGGAGAACCAACGTATGACCCACATTGCTGTTGAACGCAACCGGCGACGGCAAATGAATGACCATCTCAGTGTTCTAAGGTCCCTCATGCCTCCTTCCTATATTCAAAGGGGTGACCAAGCCTCAATAATTGGGGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGATGGTGGTTCTTCTTCCACTATGTTGTGTAAGCCCCCACCACCATCATCATCTTCATCACCACATGGCTACGGAATGAGGTCATCAACCAGTGAGGAAATGAACTGTGGGGATGAAGTAAAGGCAGAAAACAAGTCAGAGGAAGCAGACATAAAAGTGACCTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAGGCCAGGGCAATTGATAAAGGTCATCGTTGCTTTGGAGGACCTTAGGCTAACCATTCTGCACCTCAACATCACGTCCTCAGAGACGTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGGCTGTAAGCTATGTTCAGCAAGTGACATTGCAGAAGCAGTTCATCATATATTCAACTTCATTAATGGCAGCTAA 1299 0.4588 MREIDIERWRESHNCLSPLLDKTATANNAWDLRPKVAAFKTIYFDHCSALMERLQGPLNSCFFGDPLGVNCLDQVLVDEESLRLEEEEQLLISSLEDKMPFLQMLQSVESPQFFPLKEPNFQTLLRLQHMKKPWEEMTYIPRMEAQVQAALELESCVTHDMLEMQSPVKSESNDLQHPLSISCFEKVSYECNQEPHKASQSCPKSQPAATRERRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEDGGSSSTMLCKPPPPSSSSSPHGYGMRSSTSEEMNCGDEVKAENKSEEADIKVTLIQTHVNLKIECQRRPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEGCKLCSASDIAEAVHHIFNFINGS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02048 432 Pfam Helix-loop-helix DNA-binding domain 231 282 IPR011598 GO:0046983
Spst4g02048 432 Gene3D - 220 298 IPR036638 GO:0046983
Spst4g02048 432 FunFam Basic helix-loop-helix transcription factor 221 296 - -
Spst4g02048 432 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 281 IPR011598 GO:0046983
Spst4g02048 432 Coils Coil 278 301 - -
Spst4g02048 432 CDD bHLH_AtFAMA_like 233 306 - -
Spst4g02048 432 PANTHER TRANSCRIPTION FACTOR FAMA 161 426 IPR044283 GO:0003700|GO:0010052
Spst4g02048 432 MobiDBLite consensus disorder prediction 195 231 - -
Spst4g02048 432 SMART finulus 236 287 IPR011598 GO:0046983
Spst4g02048 432 MobiDBLite consensus disorder prediction 292 336 - -
Spst4g02048 432 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 300 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02048 Spst-Chr4 61277260 61280107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02048 89 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 43.750 3.92e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g02048 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02048 - - gmx:100789928 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02048 4 61277260 61280107 Spst4g02048 4 61277260 61280107 ECH