Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02044 ATGGCTGAGTTGAACGGTACGATGCAAGAGCACGGGACGGACAACAATGGCGATCGCTCTGCAGAGGTGGTTCGGTGGGAGACGTTTCTGCCGCGGATGGTGCTCAGAGTCCTGCTTGTAGAAGCTGATCATTCTACTCGACAAATCATTGCTGCGCTTCTTCGCAAATGCAGTTACACCGTTATCGCGGTTCCGGATGGATTAAAGGCATGGGAATTGTTGAAGAAGAAGGCTTCAGAGCTAGATCTCATAATAACTGAAGTGGATCTCCCAGCAATATCTGGATTTGCACTTCTTTCTTTAATCATGGAGCATGAAATTTGTAAAAACATTCCTGTCATAATGATGTCTTCTCATGATTCAGTAAGCATGGTGTTGAAATGCATGCTAAAAGGGGCAGTTGATTTTCTTATAAAACCTATTCGGAAGAATGAACTTGGGAACTTGTGGCAGCATGTGTGGAGAAGGCACGCAAATAGCACTCCTACTCAAAATACAACATTCTCGCCAAAAAACCTTACAACTGCCTCTGAGGACAACTCTGCAAGCAATAAATCTAGTGGTTCGGTGGCTTCCTCTCAGAAAAACAACGAATGGAGTGAAAGATTAAGTGAGGCTCAAGATGTACCACTGTCGAAAAGCTCTAAACAGAAGAAAATTGATTTGGTGAAGCATGAAAAATTTGCCAGATTTGATAGTGAATCAGCTGAGATTAATAATGAAACAAGAGATAAATCAATTACAACTGTATCAGATGCTGCAAGGTGCAACAAAACTTTTGAACCGACAGATTTAAGGCTAGAAGAACAAGGGAATGGCTCTTCTGATACTGAAATTGAGATTGAAATCTTAAAATCTGACTTAGGCATTGGTTATTCTATTATTAGCACTGAGTTGCATGGATGCAGTGATGAGCGGGTGGAACCTTCTAAAGGAGCTATTGACTTGATTGCCACATTTGGAAATCTTCCAAAGTTCCCTAATGAAAACTGTAGTCTTGATGGTACAACCAAGTTTGACTGTGTTACGGAATTGGAACTTTCTTTAAGAAGTGAGTTTCCTGGAAGCTCAGGTAAACAAACAAGTGAAGCAACAGAGGAATCTCAAAGATTGAACCATTCAAACACTTCTGCATTTTCTTGGTATAGTAATAGTAAATTGTTGCACCCTCTTTTCCGAACACCATCAATTACATCCGCTGAAGTAAACAACCCCAGTTGGGATTCTCTTGAATCCCATAAACTGTCTCGAACTACTTCTGGAAATTGTTGTCAGTATGGTGGCTCAAATCAAAACCTAGAGAATATGATCAGTACAGTCATTGATCAGTATGGACAAGTTAAACCAGAAGTATCAAACAGTCAACTTGGAATCTTACCTGTTTCAGGGGTTATTTCAGATCTTAAGTCCAACGTACATGGTAATGTTTTCACTTCTGTGTTCTACGCACCATCTGGTACTCACCCTGTGTGGAGTCCGAAGCCAGCCTTCCAGAACGAGAGTTCTCCCTTTCCCACAAGTACCTCTTCCCAGTCCAATCCTGAAAGTCACAACTCTGACCATGACTGTTCCAATGATGCTACGTGTCTTAATCAAAATGTAAAGGAAGACACTGATTTGGATCACGCAAGGCATGATTCTCCTGCTGCTGATCACAGTGCTGGTAATAGTATATGCCATGATGCTGCAAATCATATCAATAATAGTGCATATGGAAGCATGGACAGTGGAAATGATGGGAATGCTACTTCAGCTATAGGATCCAAGAACAACCCAGAAGGTTTCAGTGACAATGTTTATCATAATTATGATGGATTTAGAGCGATAGATTCTCATCGCTCCAGTCAAAGAGAAGCAGCTCTAAACAAGTTTAGACTGAAACGGAAAGAGAGATGCTTCGAGAAAAAGGTCCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGAGGCCTCGGGTCAAAGGGCAGTTTGTACGCCAAGTACACAATGATCAGCCAGTCGCTGAGGCTGGTGGTGATTCATGA 2022 0.4179 MAELNGTMQEHGTDNNGDRSAEVVRWETFLPRMVLRVLLVEADHSTRQIIAALLRKCSYTVIAVPDGLKAWELLKKKASELDLIITEVDLPAISGFALLSLIMEHEICKNIPVIMMSSHDSVSMVLKCMLKGAVDFLIKPIRKNELGNLWQHVWRRHANSTPTQNTTFSPKNLTTASEDNSASNKSSGSVASSQKNNEWSERLSEAQDVPLSKSSKQKKIDLVKHEKFARFDSESAEINNETRDKSITTVSDAARCNKTFEPTDLRLEEQGNGSSDTEIEIEILKSDLGIGYSIISTELHGCSDERVEPSKGAIDLIATFGNLPKFPNENCSLDGTTKFDCVTELELSLRSEFPGSSGKQTSEATEESQRLNHSNTSAFSWYSNSKLLHPLFRTPSITSAEVNNPSWDSLESHKLSRTTSGNCCQYGGSNQNLENMISTVIDQYGQVKPEVSNSQLGILPVSGVISDLKSNVHGNVFTSVFYAPSGTHPVWSPKPAFQNESSPFPTSTSSQSNPESHNSDHDCSNDATCLNQNVKEDTDLDHARHDSPAADHSAGNSICHDAANHINNSAYGSMDSGNDGNATSAIGSKNNPEGFSDNVYHNYDGFRAIDSHRSSQREAALNKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDQPVAEAGGDS 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02044 673 CDD psREC_PRR 37 140 - -
Spst4g02044 673 MobiDBLite consensus disorder prediction 640 656 - -
Spst4g02044 673 Gene3D - 33 263 - -
Spst4g02044 673 MobiDBLite consensus disorder prediction 492 528 - -
Spst4g02044 673 Pfam Response regulator receiver domain 37 146 IPR001789 GO:0000160
Spst4g02044 673 ProSiteProfiles CCT domain profile. 617 659 IPR010402 GO:0005515
Spst4g02044 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 362 IPR045279 GO:0009736
Spst4g02044 673 MobiDBLite consensus disorder prediction 352 371 - -
Spst4g02044 673 MobiDBLite consensus disorder prediction 160 200 - -
Spst4g02044 673 SUPERFAMILY CheY-like 35 162 IPR011006 -
Spst4g02044 673 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Spst4g02044 673 Pfam CCT motif 617 659 IPR010402 GO:0005515
Spst4g02044 673 MobiDBLite consensus disorder prediction 640 673 - -
Spst4g02044 673 MobiDBLite consensus disorder prediction 160 216 - -
Spst4g02044 673 SMART REC_2 35 150 IPR001789 GO:0000160
Spst4g02044 673 MobiDBLite consensus disorder prediction 353 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02044 Spst-Chr4 61251558 61256086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02044 512 664 Response Regulator Gene Family AT5G24470 41.176 9.50e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Spst4g02044 Response_reg 2.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02044 K12130 - gmx:100802674 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02044 4 61251558 61256086 Spst4g02044 4 61251558 61256086 ECH