Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst4g02039 | ATGAATGATACAACTTCTACCAAAATCTTTGTTGGAGGCTTAGCTTGGGAGACTCAAAGGGACACACTGAGGAGGTATTTTGAGCAGTTCGGAGAGATCTTAGAAGCTGTTGTTATCACAGATAAGAACACTGGGAGATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGTAGCAATGAAAGCATGTCAACACCCCTATCCAATAATTGATGGAAGGAGAACAAATTGCAACGTTGCATCTATTGGTGCAAACAAGAATCGCACGCAGGCTCCACAACATGGTGCAGGTCGGTTCAGAGCAGCACCTGGTTTCTTGGCTTCACCTCTTTATCATGGCCCTTCCTCCACATTGGTCCATCAAAACAATGGAGAATACACATTTCCTAATTCAACTTTTGGATACATTGGACATTCACATGACATGATGTACCCCATGAACTGTTATGAGATTCTTGGAGGGCAACAGTTCCCAACTCACTACCCCTCCATTGGGGCATCTGGACCAATCTTTGTCCATAACATTTACCCTTTTTCTGCTCAGTATGCACACAATAGCCATGCTCAAGGTTTTGGAGTTCAATATCCGCAAATGATGCAATTTTCAGTTATTCATAGGCACCATGGCTCATATACTATCCATGCATTTCCTTCTTCAATGGATTTGCCAGCTATTAGTGCAGATGCTCCACCACAAACCACTGAAAAAACTTCTGAACAAGATTCTTCAGCTGAATCCTTACATAAATAA | 756 | 0.4233 | MNDTTSTKIFVGGLAWETQRDTLRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEVAMKACQHPYPIIDGRRTNCNVASIGANKNRTQAPQHGAGRFRAAPGFLASPLYHGPSSTLVHQNNGEYTFPNSTFGYIGHSHDMMYPMNCYEILGGQQFPTHYPSIGASGPIFVHNIYPFSAQYAHNSHAQGFGVQYPQMMQFSVIHRHHGSYTIHAFPSSMDLPAISADAPPQTTEKTSEQDSSAESLHK | 251 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst4g02039 | 251 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 66 | IPR000504 | GO:0003723 | |
Spst4g02039 | 251 | SMART | rrm1_1 | 8 | 80 | IPR000504 | GO:0003723 | |
Spst4g02039 | 251 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 94 | IPR035979 | GO:0003676 | |
Spst4g02039 | 251 | CDD | RRM_RBM24_RBM38_like | 7 | 82 | - | - | |
Spst4g02039 | 251 | PANTHER | BOULE-RELATED | 2 | 237 | - | - | |
Spst4g02039 | 251 | MobiDBLite | consensus disorder prediction | 226 | 251 | - | - | |
Spst4g02039 | 251 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 84 | IPR000504 | GO:0003723 | |
Spst4g02039 | 251 | Gene3D | - | 1 | 101 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst4g02039 | Spst-Chr4 | 61193414 | 61194925 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst4g02039 | 3 | 83 | C2H2 Transcription Factor Family | AT2G19380 | 44.444 | 2.87e-16 | 75.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst4g02039 | - | - | gmx:100782484 | 373.629 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst4g02039 | 4 | 61193414 | 61194925 | Spst4g02039 | 4 | 61193414 | 61194925 | ECH |