Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02039 ATGAATGATACAACTTCTACCAAAATCTTTGTTGGAGGCTTAGCTTGGGAGACTCAAAGGGACACACTGAGGAGGTATTTTGAGCAGTTCGGAGAGATCTTAGAAGCTGTTGTTATCACAGATAAGAACACTGGGAGATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGTAGCAATGAAAGCATGTCAACACCCCTATCCAATAATTGATGGAAGGAGAACAAATTGCAACGTTGCATCTATTGGTGCAAACAAGAATCGCACGCAGGCTCCACAACATGGTGCAGGTCGGTTCAGAGCAGCACCTGGTTTCTTGGCTTCACCTCTTTATCATGGCCCTTCCTCCACATTGGTCCATCAAAACAATGGAGAATACACATTTCCTAATTCAACTTTTGGATACATTGGACATTCACATGACATGATGTACCCCATGAACTGTTATGAGATTCTTGGAGGGCAACAGTTCCCAACTCACTACCCCTCCATTGGGGCATCTGGACCAATCTTTGTCCATAACATTTACCCTTTTTCTGCTCAGTATGCACACAATAGCCATGCTCAAGGTTTTGGAGTTCAATATCCGCAAATGATGCAATTTTCAGTTATTCATAGGCACCATGGCTCATATACTATCCATGCATTTCCTTCTTCAATGGATTTGCCAGCTATTAGTGCAGATGCTCCACCACAAACCACTGAAAAAACTTCTGAACAAGATTCTTCAGCTGAATCCTTACATAAATAA 756 0.4233 MNDTTSTKIFVGGLAWETQRDTLRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEVAMKACQHPYPIIDGRRTNCNVASIGANKNRTQAPQHGAGRFRAAPGFLASPLYHGPSSTLVHQNNGEYTFPNSTFGYIGHSHDMMYPMNCYEILGGQQFPTHYPSIGASGPIFVHNIYPFSAQYAHNSHAQGFGVQYPQMMQFSVIHRHHGSYTIHAFPSSMDLPAISADAPPQTTEKTSEQDSSAESLHK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02039 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 66 IPR000504 GO:0003723
Spst4g02039 251 SMART rrm1_1 8 80 IPR000504 GO:0003723
Spst4g02039 251 SUPERFAMILY RNA-binding domain, RBD 5 94 IPR035979 GO:0003676
Spst4g02039 251 CDD RRM_RBM24_RBM38_like 7 82 - -
Spst4g02039 251 PANTHER BOULE-RELATED 2 237 - -
Spst4g02039 251 MobiDBLite consensus disorder prediction 226 251 - -
Spst4g02039 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Spst4g02039 251 Gene3D - 1 101 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02039 Spst-Chr4 61193414 61194925 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02039 3 83 C2H2 Transcription Factor Family AT2G19380 44.444 2.87e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02039 - - gmx:100782484 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02039 4 61193414 61194925 Spst4g02039 4 61193414 61194925 ECH