Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02033 ATGCCGGAAAACATGAGCATATCAGTGAATGGACAATCTCAAGTCCCACCTGGCTTCAGGTTCCATCCAACTGAAGAGGAGCTTCTTCAGTACTACTTGAGGAAGAAGGTCTCGTACGAGAAGATTGACCTCGACGTCATTCGTGATGTTGATCTCAACAAGCTCGAGCCATGGGATATACAAGGTGGGTTCCTCTTTCTTCTTTTTGCAGAGAAATGCAAAATAGGAACCACCCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGATAAGAAGTACCCCACAGGAACTCGCACCAATCGCGCCACTGCTGCGGGATTCTGGAAGGCCACTGGCCGTGACAAAGTCATATACAGCAATGGAAGGAGAATTGGAATGAGAAAGACTCTGGTTTTCTACAAAGGAAGAGCCCCACATGGCCAGAAATCCGATTGGATCATGCATGAATACAGACTAGACGACAACACCACCAGCGACACCAATATTGTGTCGAATGTGATGGGCGATGGTGGTCAGGAAGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACATTCTGAAACCCCTAAGCCCCATAGGTTCGGGGGAGGGTAGAAGGAGCTTGTTCGAGCCGTGCGACGAGGGAGCATTGGAGCAAATACTGCAACAAATGGGAAGGGGTTGCAAGGAAGAGTACGAGGGAAGCTACAGCTATGGAAGGTTTGGAAGGCCTTATGAGACAGGTGTGAACAATGACAGGTTCATGAAGCTGCCAAGTCTAGAGAGCCCAAAATCCACAAGCATGGAGAGCCAGCAGAACAATAACAACAACAACTCTAATAATGGTGATGATAACAATGATCAGAATAATAATGGGTACCATCCCATTATTCCAGTAGACATGGGGACGGACAATGAAGGGTCATTCGCAACCCACCAGGTGAGTGGTGGTGACCCCAGCATGGTTCACCCAATGGAGGCATCATCATCCTTGGTGGTAGGATCAGGATCAGGTGGTGGAGGCCTCACCAACTGGGCTGCGTTCGACCGTTTGGTTGCCTCGCAGCTCAATGGCCAAACCGACGCCTCTAGGCAGTTCGAATGCTTCAACGACCCCAACATCGTCTACTGCCCTACCCACCATGATCTTCCATTGCCCACCCTCCGATCCTCATCAACGCCTTCGTCAACCTCCACCCTCACCAGACCTTCCCCTGCACCCGCATACATCAACCCCGCACACGACTTCACCAGCGAGATTGACCTTTGGAACTTCACCCGCCCCACCTCGGAACCTCTCTGCCACGTCTCCAACACCTCAGTCTAG 1311 0.5065 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQGGFLFLLFAEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTSDTNIVSNVMGDGGQEEGWVVCRIFKKKNILKPLSPIGSGEGRRSLFEPCDEGALEQILQQMGRGCKEEYEGSYSYGRFGRPYETGVNNDRFMKLPSLESPKSTSMESQQNNNNNNSNNGDDNNDQNNNGYHPIIPVDMGTDNEGSFATHQVSGGDPSMVHPMEASSSLVVGSGSGGGGLTNWAAFDRLVASQLNGQTDASRQFECFNDPNIVYCPTHHDLPLPTLRSSSTPSSTSTLTRPSPAPAYINPAHDFTSEIDLWNFTRPTSEPLCHVSNTSV 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02033 436 MobiDBLite consensus disorder prediction 255 288 - -
Spst4g02033 436 MobiDBLite consensus disorder prediction 382 400 - -
Spst4g02033 436 Gene3D NAC domain 24 188 IPR036093 GO:0003677|GO:0006355
Spst4g02033 436 ProSiteProfiles NAC domain profile. 15 184 IPR003441 GO:0003677|GO:0006355
Spst4g02033 436 Pfam No apical meristem (NAM) protein 16 152 IPR003441 GO:0003677|GO:0006355
Spst4g02033 436 FunFam NAC domain-containing protein 24 188 - -
Spst4g02033 436 SUPERFAMILY NAC domain 9 184 IPR036093 GO:0003677|GO:0006355
Spst4g02033 436 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 276 - -
Spst4g02033 436 MobiDBLite consensus disorder prediction 250 310 - -
Spst4g02033 436 MobiDBLite consensus disorder prediction 382 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02033 Spst-Chr4 61148425 61150317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02033 1 435 NAC Transcription Factor Family AT2G46770 51.885 2.16e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst4g02033 NAM 4.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02033 - - gmx:100793308 632.484